Gene : Brara.K00336 B. rapa FPsc v1.3
Defline:  (1 of 4) 2.5.1.21 - Squalene synthase / Squalene synthetase Genomic Order:  24
Name:  ? Brara.K00336 Secondary Identifier:  ? PAC:30627560
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-2541 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5670 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K00336 0.5kb upstream 0.5kb upstream 2932 true Scaffold14751: 213149-216080 Brassica rapa FPsc
Brara.K00336 0.5kb upstream 0.5kb upstream 500 false Scaffold14751: 215581-216080 Brassica rapa FPsc
Brara.K00336 0.5kb downstream 0.5kb downstream 2932 true Scaffold14751: 212649-215580 Brassica rapa FPsc
Brara.K00336 0.5kb downstream 0.5kb downstream 500 false Scaffold14751: 212649-213148 Brassica rapa FPsc
Brara.K00336 1.0kb upstream 1.0kb upstream 3432 true Scaffold14751: 213149-216580 Brassica rapa FPsc
Brara.K00336 1.0kb upstream 1.0kb upstream 1000 false Scaffold14751: 215581-216580 Brassica rapa FPsc
Brara.K00336 1.0kb downstream 1.0kb downstream 3432 true Scaffold14751: 212149-215580 Brassica rapa FPsc
Brara.K00336 1.0kb downstream 1.0kb downstream 1000 false Scaffold14751: 212149-213148 Brassica rapa FPsc
Brara.K00336 2.0kb upstream 2.0kb upstream 4432 true Scaffold14751: 213149-217580 Brassica rapa FPsc
Brara.K00336 2.0kb upstream 2.0kb upstream 2000 false Scaffold14751: 215581-217580 Brassica rapa FPsc
Brara.K00336 2.0kb downstream 2.0kb downstream 4432 true Scaffold14751: 211149-215580 Brassica rapa FPsc
Brara.K00336 2.0kb downstream 2.0kb downstream 2000 false Scaffold14751: 211149-213148 Brassica rapa FPsc
Brara.K00336 5.0kb upstream 5.0kb upstream 7432 true Scaffold14751: 213149-220580 Brassica rapa FPsc
Brara.K00336 5.0kb upstream 5.0kb upstream 5000 false Scaffold14751: 215581-220580 Brassica rapa FPsc
Brara.K00336 5.0kb downstream 5.0kb downstream 7432 true Scaffold14751: 208149-215580 Brassica rapa FPsc
Brara.K00336 5.0kb downstream 5.0kb downstream 5000 false Scaffold14751: 208149-213148 Brassica rapa FPsc
Brara.K00336 10.0kb upstream 10.0kb upstream 12432 true Scaffold14751: 213149-225580 Brassica rapa FPsc
Brara.K00336 10.0kb upstream 10.0kb upstream 10000 false Scaffold14751: 215581-225580 Brassica rapa FPsc
Brara.K00336 10.0kb downstream 10.0kb downstream 12432 true Scaffold14751: 203149-215580 Brassica rapa FPsc
Brara.K00336 10.0kb downstream 10.0kb downstream 10000 false Scaffold14751: 203149-213148 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381791 5261 Brassicaceae View MSA
123803450 5264 Brassicales-Malvales View MSA
124300559 5266 SBM View MSA
124151720 5268 Malvidae View MSA
123877097 5270 Rosid View MSA
123747848 5271 Pentapetalae View MSA
122787825 5272 Eudicot View MSA
122042609 5273 Angiosperm View MSA
121351426 5274 Embryophyte View MSA
123424778 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier