Gene : Brara.K00392 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11592:SF11 - PHOSPHOLIPID HYDROPEROXIDE GLUTATHIONE PEROXIDASE 1, CHLOROPLASTIC-RELATED Genomic Order:  20
Name:  ? Brara.K00392 Secondary Identifier:  ? PAC:30614911
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-4081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K00392 0.5kb upstream 0.5kb upstream 1871 true Scaffold16715: 132235-134105 Brassica rapa FPsc
Brara.K00392 0.5kb upstream 0.5kb upstream 500 false Scaffold16715: 133606-134105 Brassica rapa FPsc
Brara.K00392 0.5kb downstream 0.5kb downstream 1871 true Scaffold16715: 131735-133605 Brassica rapa FPsc
Brara.K00392 0.5kb downstream 0.5kb downstream 500 false Scaffold16715: 131735-132234 Brassica rapa FPsc
Brara.K00392 1.0kb upstream 1.0kb upstream 2371 true Scaffold16715: 132235-134605 Brassica rapa FPsc
Brara.K00392 1.0kb upstream 1.0kb upstream 1000 false Scaffold16715: 133606-134605 Brassica rapa FPsc
Brara.K00392 1.0kb downstream 1.0kb downstream 2371 true Scaffold16715: 131235-133605 Brassica rapa FPsc
Brara.K00392 1.0kb downstream 1.0kb downstream 1000 false Scaffold16715: 131235-132234 Brassica rapa FPsc
Brara.K00392 2.0kb upstream 2.0kb upstream 3371 true Scaffold16715: 132235-135605 Brassica rapa FPsc
Brara.K00392 2.0kb upstream 2.0kb upstream 2000 false Scaffold16715: 133606-135605 Brassica rapa FPsc
Brara.K00392 2.0kb downstream 2.0kb downstream 3371 true Scaffold16715: 130235-133605 Brassica rapa FPsc
Brara.K00392 2.0kb downstream 2.0kb downstream 2000 false Scaffold16715: 130235-132234 Brassica rapa FPsc
Brara.K00392 5.0kb upstream 5.0kb upstream 6371 true Scaffold16715: 132235-138605 Brassica rapa FPsc
Brara.K00392 5.0kb upstream 5.0kb upstream 5000 false Scaffold16715: 133606-138605 Brassica rapa FPsc
Brara.K00392 5.0kb downstream 5.0kb downstream 6371 true Scaffold16715: 127235-133605 Brassica rapa FPsc
Brara.K00392 5.0kb downstream 5.0kb downstream 5000 false Scaffold16715: 127235-132234 Brassica rapa FPsc
Brara.K00392 10.0kb upstream 10.0kb upstream 11371 true Scaffold16715: 132235-143605 Brassica rapa FPsc
Brara.K00392 10.0kb upstream 10.0kb upstream 10000 false Scaffold16715: 133606-143605 Brassica rapa FPsc
Brara.K00392 10.0kb downstream 10.0kb downstream 11371 true Scaffold16715: 122235-133605 Brassica rapa FPsc
Brara.K00392 10.0kb downstream 10.0kb downstream 10000 false Scaffold16715: 122235-132234 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379433 5261 Brassicaceae View MSA
123838768 5264 Brassicales-Malvales View MSA
124342773 5266 SBM View MSA
124240030 5268 Malvidae View MSA
124063282 5270 Rosid View MSA
123740898 5271 Pentapetalae View MSA
122792011 5272 Eudicot View MSA
122046042 5273 Angiosperm View MSA
121349724 5274 Embryophyte View MSA
123426849 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier