Gene : Brara.K00442 B. rapa FPsc v1.3
Defline:  (1 of 5) 6.6.1.1 - Magnesium chelatase / Protoporphyrin IX Mg-chelatase Genomic Order:  27
Name:  ? Brara.K00442 Secondary Identifier:  ? PAC:30606806
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CHLOROPHYLL-SYN Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K00442 0.5kb upstream 0.5kb upstream 1992 true Scaffold18850: 173041-175032 Brassica rapa FPsc
Brara.K00442 0.5kb upstream 0.5kb upstream 500 false Scaffold18850: 173041-173540 Brassica rapa FPsc
Brara.K00442 0.5kb downstream 0.5kb downstream 1992 true Scaffold18850: 173541-175532 Brassica rapa FPsc
Brara.K00442 0.5kb downstream 0.5kb downstream 500 false Scaffold18850: 175033-175532 Brassica rapa FPsc
Brara.K00442 1.0kb upstream 1.0kb upstream 2492 true Scaffold18850: 172541-175032 Brassica rapa FPsc
Brara.K00442 1.0kb upstream 1.0kb upstream 1000 false Scaffold18850: 172541-173540 Brassica rapa FPsc
Brara.K00442 1.0kb downstream 1.0kb downstream 2492 true Scaffold18850: 173541-176032 Brassica rapa FPsc
Brara.K00442 1.0kb downstream 1.0kb downstream 1000 false Scaffold18850: 175033-176032 Brassica rapa FPsc
Brara.K00442 2.0kb upstream 2.0kb upstream 3492 true Scaffold18850: 171541-175032 Brassica rapa FPsc
Brara.K00442 2.0kb upstream 2.0kb upstream 2000 false Scaffold18850: 171541-173540 Brassica rapa FPsc
Brara.K00442 2.0kb downstream 2.0kb downstream 3492 true Scaffold18850: 173541-177032 Brassica rapa FPsc
Brara.K00442 2.0kb downstream 2.0kb downstream 2000 false Scaffold18850: 175033-177032 Brassica rapa FPsc
Brara.K00442 5.0kb upstream 5.0kb upstream 6492 true Scaffold18850: 168541-175032 Brassica rapa FPsc
Brara.K00442 5.0kb upstream 5.0kb upstream 5000 false Scaffold18850: 168541-173540 Brassica rapa FPsc
Brara.K00442 5.0kb downstream 5.0kb downstream 6492 true Scaffold18850: 173541-180032 Brassica rapa FPsc
Brara.K00442 5.0kb downstream 5.0kb downstream 5000 false Scaffold18850: 175033-180032 Brassica rapa FPsc
Brara.K00442 10.0kb upstream 10.0kb upstream 11492 true Scaffold18850: 163541-175032 Brassica rapa FPsc
Brara.K00442 10.0kb upstream 10.0kb upstream 10000 false Scaffold18850: 163541-173540 Brassica rapa FPsc
Brara.K00442 10.0kb downstream 10.0kb downstream 11492 true Scaffold18850: 173541-185032 Brassica rapa FPsc
Brara.K00442 10.0kb downstream 10.0kb downstream 10000 false Scaffold18850: 175033-185032 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026298 5273 Angiosperm View MSA
122344463 5261 Brassicaceae Singleton cluster - no MSA
123784467 5264 Brassicales-Malvales Singleton cluster - no MSA
124282641 5266 SBM Singleton cluster - no MSA
124251602 5268 Malvidae View MSA
124063666 5270 Rosid View MSA
123736903 5271 Pentapetalae View MSA
122790961 5272 Eudicot View MSA
121346302 5274 Embryophyte View MSA
123426232 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier