Gene : Brara.E03229 B. rapa FPsc v1.3
Defline:  (1 of 20) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  3229
Name:  ? Brara.E03229 Secondary Identifier:  ? PAC:30624225
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.E03229 0.5kb upstream 0.5kb upstream 1842 true A05: 26240028-26241869 Brassica rapa FPsc
Brara.E03229 0.5kb upstream 0.5kb upstream 500 false A05: 26241370-26241869 Brassica rapa FPsc
Brara.E03229 0.5kb downstream 0.5kb downstream 1842 true A05: 26239528-26241369 Brassica rapa FPsc
Brara.E03229 0.5kb downstream 0.5kb downstream 500 false A05: 26239528-26240027 Brassica rapa FPsc
Brara.E03229 1.0kb upstream 1.0kb upstream 2342 true A05: 26240028-26242369 Brassica rapa FPsc
Brara.E03229 1.0kb upstream 1.0kb upstream 1000 false A05: 26241370-26242369 Brassica rapa FPsc
Brara.E03229 1.0kb downstream 1.0kb downstream 2342 true A05: 26239028-26241369 Brassica rapa FPsc
Brara.E03229 1.0kb downstream 1.0kb downstream 1000 false A05: 26239028-26240027 Brassica rapa FPsc
Brara.E03229 2.0kb upstream 2.0kb upstream 3342 true A05: 26240028-26243369 Brassica rapa FPsc
Brara.E03229 2.0kb upstream 2.0kb upstream 2000 false A05: 26241370-26243369 Brassica rapa FPsc
Brara.E03229 2.0kb downstream 2.0kb downstream 3342 true A05: 26238028-26241369 Brassica rapa FPsc
Brara.E03229 2.0kb downstream 2.0kb downstream 2000 false A05: 26238028-26240027 Brassica rapa FPsc
Brara.E03229 5.0kb upstream 5.0kb upstream 6342 true A05: 26240028-26246369 Brassica rapa FPsc
Brara.E03229 5.0kb upstream 5.0kb upstream 5000 false A05: 26241370-26246369 Brassica rapa FPsc
Brara.E03229 5.0kb downstream 5.0kb downstream 6342 true A05: 26235028-26241369 Brassica rapa FPsc
Brara.E03229 5.0kb downstream 5.0kb downstream 5000 false A05: 26235028-26240027 Brassica rapa FPsc
Brara.E03229 10.0kb upstream 10.0kb upstream 11342 true A05: 26240028-26251369 Brassica rapa FPsc
Brara.E03229 10.0kb upstream 10.0kb upstream 10000 false A05: 26241370-26251369 Brassica rapa FPsc
Brara.E03229 10.0kb downstream 10.0kb downstream 11342 true A05: 26230028-26241369 Brassica rapa FPsc
Brara.E03229 10.0kb downstream 10.0kb downstream 10000 false A05: 26230028-26240027 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360414 5261 Brassicaceae View MSA
123797948 5264 Brassicales-Malvales View MSA
124295645 5266 SBM View MSA
124148023 5268 Malvidae View MSA
123874109 5270 Rosid View MSA
123746059 5271 Pentapetalae View MSA
122771759 5272 Eudicot View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier