Gene : Brara.K00037 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR22912:SF1 - NITRITE REDUCTASE (NADH) LARGE SUBUNIT Genomic Order:  21
Name:  ? Brara.K00037 Secondary Identifier:  ? PAC:30614757
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7279 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K00037 0.5kb upstream 0.5kb upstream 3407 true Scaffold10985: 137480-140886 Brassica rapa FPsc
Brara.K00037 0.5kb upstream 0.5kb upstream 500 false Scaffold10985: 140387-140886 Brassica rapa FPsc
Brara.K00037 0.5kb downstream 0.5kb downstream 3407 true Scaffold10985: 136980-140386 Brassica rapa FPsc
Brara.K00037 0.5kb downstream 0.5kb downstream 500 false Scaffold10985: 136980-137479 Brassica rapa FPsc
Brara.K00037 1.0kb upstream 1.0kb upstream 3907 true Scaffold10985: 137480-141386 Brassica rapa FPsc
Brara.K00037 1.0kb upstream 1.0kb upstream 1000 false Scaffold10985: 140387-141386 Brassica rapa FPsc
Brara.K00037 1.0kb downstream 1.0kb downstream 3907 true Scaffold10985: 136480-140386 Brassica rapa FPsc
Brara.K00037 1.0kb downstream 1.0kb downstream 1000 false Scaffold10985: 136480-137479 Brassica rapa FPsc
Brara.K00037 2.0kb upstream 2.0kb upstream 4907 true Scaffold10985: 137480-142386 Brassica rapa FPsc
Brara.K00037 2.0kb upstream 2.0kb upstream 2000 false Scaffold10985: 140387-142386 Brassica rapa FPsc
Brara.K00037 2.0kb downstream 2.0kb downstream 4907 true Scaffold10985: 135480-140386 Brassica rapa FPsc
Brara.K00037 2.0kb downstream 2.0kb downstream 2000 false Scaffold10985: 135480-137479 Brassica rapa FPsc
Brara.K00037 5.0kb upstream 5.0kb upstream 7907 true Scaffold10985: 137480-145386 Brassica rapa FPsc
Brara.K00037 5.0kb upstream 5.0kb upstream 5000 false Scaffold10985: 140387-145386 Brassica rapa FPsc
Brara.K00037 5.0kb downstream 5.0kb downstream 7907 true Scaffold10985: 132480-140386 Brassica rapa FPsc
Brara.K00037 5.0kb downstream 5.0kb downstream 5000 false Scaffold10985: 132480-137479 Brassica rapa FPsc
Brara.K00037 10.0kb upstream 10.0kb upstream 12907 true Scaffold10985: 137480-150386 Brassica rapa FPsc
Brara.K00037 10.0kb upstream 10.0kb upstream 10000 false Scaffold10985: 140387-150386 Brassica rapa FPsc
Brara.K00037 10.0kb downstream 10.0kb downstream 12907 true Scaffold10985: 127480-140386 Brassica rapa FPsc
Brara.K00037 10.0kb downstream 10.0kb downstream 10000 false Scaffold10985: 127480-137479 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364679 5261 Brassicaceae View MSA
123828602 5264 Brassicales-Malvales View MSA
124344172 5266 SBM View MSA
124241346 5268 Malvidae View MSA
124065311 5270 Rosid View MSA
123739176 5271 Pentapetalae View MSA
122786573 5272 Eudicot View MSA
122046891 5273 Angiosperm View MSA
121348097 5274 Embryophyte View MSA
123427504 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier