Gene : Brara.E03617 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR12526:SF337 - STARCH SYNTHASE 2, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  3617
Name:  ? Brara.E03617 Secondary Identifier:  ? PAC:30627335
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLYCOGENSYNTH-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-622 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.E03617 0.5kb upstream 0.5kb upstream 3990 true A05: 28254948-28258937 Brassica rapa FPsc
Brara.E03617 0.5kb upstream 0.5kb upstream 500 false A05: 28258438-28258937 Brassica rapa FPsc
Brara.E03617 0.5kb downstream 0.5kb downstream 3990 true A05: 28254448-28258437 Brassica rapa FPsc
Brara.E03617 0.5kb downstream 0.5kb downstream 500 false A05: 28254448-28254947 Brassica rapa FPsc
Brara.E03617 1.0kb upstream 1.0kb upstream 4490 true A05: 28254948-28259437 Brassica rapa FPsc
Brara.E03617 1.0kb upstream 1.0kb upstream 1000 false A05: 28258438-28259437 Brassica rapa FPsc
Brara.E03617 1.0kb downstream 1.0kb downstream 4490 true A05: 28253948-28258437 Brassica rapa FPsc
Brara.E03617 1.0kb downstream 1.0kb downstream 1000 false A05: 28253948-28254947 Brassica rapa FPsc
Brara.E03617 2.0kb upstream 2.0kb upstream 5490 true A05: 28254948-28260437 Brassica rapa FPsc
Brara.E03617 2.0kb upstream 2.0kb upstream 2000 false A05: 28258438-28260437 Brassica rapa FPsc
Brara.E03617 2.0kb downstream 2.0kb downstream 5490 true A05: 28252948-28258437 Brassica rapa FPsc
Brara.E03617 2.0kb downstream 2.0kb downstream 2000 false A05: 28252948-28254947 Brassica rapa FPsc
Brara.E03617 5.0kb upstream 5.0kb upstream 8490 true A05: 28254948-28263437 Brassica rapa FPsc
Brara.E03617 5.0kb upstream 5.0kb upstream 5000 false A05: 28258438-28263437 Brassica rapa FPsc
Brara.E03617 5.0kb downstream 5.0kb downstream 8490 true A05: 28249948-28258437 Brassica rapa FPsc
Brara.E03617 5.0kb downstream 5.0kb downstream 5000 false A05: 28249948-28254947 Brassica rapa FPsc
Brara.E03617 10.0kb upstream 10.0kb upstream 13490 true A05: 28254948-28268437 Brassica rapa FPsc
Brara.E03617 10.0kb upstream 10.0kb upstream 10000 false A05: 28258438-28268437 Brassica rapa FPsc
Brara.E03617 10.0kb downstream 10.0kb downstream 13490 true A05: 28244948-28258437 Brassica rapa FPsc
Brara.E03617 10.0kb downstream 10.0kb downstream 10000 false A05: 28244948-28254947 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367059 5261 Brassicaceae View MSA
123831614 5264 Brassicales-Malvales View MSA
124342680 5266 SBM View MSA
124239099 5268 Malvidae View MSA
124066587 5270 Rosid View MSA
123744003 5271 Pentapetalae View MSA
122787814 5272 Eudicot View MSA
122042262 5273 Angiosperm View MSA
121347324 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier