Gene : Brara.C03237 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR31375:SF28 - POLYGALACTURONASE QRT2 Genomic Order:  3237
Name:  ? Brara.C03237 Secondary Identifier:  ? PAC:30615654
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C03237 0.5kb upstream 0.5kb upstream 3068 true A03: 16384865-16387932 Brassica rapa FPsc
Brara.C03237 0.5kb upstream 0.5kb upstream 500 false A03: 16384865-16385364 Brassica rapa FPsc
Brara.C03237 0.5kb downstream 0.5kb downstream 3068 true A03: 16385365-16388432 Brassica rapa FPsc
Brara.C03237 0.5kb downstream 0.5kb downstream 500 false A03: 16387933-16388432 Brassica rapa FPsc
Brara.C03237 1.0kb upstream 1.0kb upstream 3568 true A03: 16384365-16387932 Brassica rapa FPsc
Brara.C03237 1.0kb upstream 1.0kb upstream 1000 false A03: 16384365-16385364 Brassica rapa FPsc
Brara.C03237 1.0kb downstream 1.0kb downstream 3568 true A03: 16385365-16388932 Brassica rapa FPsc
Brara.C03237 1.0kb downstream 1.0kb downstream 1000 false A03: 16387933-16388932 Brassica rapa FPsc
Brara.C03237 2.0kb upstream 2.0kb upstream 4568 true A03: 16383365-16387932 Brassica rapa FPsc
Brara.C03237 2.0kb upstream 2.0kb upstream 2000 false A03: 16383365-16385364 Brassica rapa FPsc
Brara.C03237 2.0kb downstream 2.0kb downstream 4568 true A03: 16385365-16389932 Brassica rapa FPsc
Brara.C03237 2.0kb downstream 2.0kb downstream 2000 false A03: 16387933-16389932 Brassica rapa FPsc
Brara.C03237 5.0kb upstream 5.0kb upstream 7568 true A03: 16380365-16387932 Brassica rapa FPsc
Brara.C03237 5.0kb upstream 5.0kb upstream 5000 false A03: 16380365-16385364 Brassica rapa FPsc
Brara.C03237 5.0kb downstream 5.0kb downstream 7568 true A03: 16385365-16392932 Brassica rapa FPsc
Brara.C03237 5.0kb downstream 5.0kb downstream 5000 false A03: 16387933-16392932 Brassica rapa FPsc
Brara.C03237 10.0kb upstream 10.0kb upstream 12568 true A03: 16375365-16387932 Brassica rapa FPsc
Brara.C03237 10.0kb upstream 10.0kb upstream 10000 false A03: 16375365-16385364 Brassica rapa FPsc
Brara.C03237 10.0kb downstream 10.0kb downstream 12568 true A03: 16385365-16397932 Brassica rapa FPsc
Brara.C03237 10.0kb downstream 10.0kb downstream 10000 false A03: 16387933-16397932 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122346995 5261 Brassicaceae Singleton cluster - no MSA
123839826 5264 Brassicales-Malvales View MSA
124338536 5266 SBM View MSA
124237828 5268 Malvidae View MSA
124073768 5270 Rosid View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier