Gene : Brara.C03227 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR31375:SF37 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Genomic Order:  3227
Name:  ? Brara.C03227 Secondary Identifier:  ? PAC:30617064
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C03227 0.5kb upstream 0.5kb upstream 2070 true A03: 16342799-16344868 Brassica rapa FPsc
Brara.C03227 0.5kb upstream 0.5kb upstream 500 false A03: 16344369-16344868 Brassica rapa FPsc
Brara.C03227 0.5kb downstream 0.5kb downstream 2070 true A03: 16342299-16344368 Brassica rapa FPsc
Brara.C03227 0.5kb downstream 0.5kb downstream 500 false A03: 16342299-16342798 Brassica rapa FPsc
Brara.C03227 1.0kb upstream 1.0kb upstream 2570 true A03: 16342799-16345368 Brassica rapa FPsc
Brara.C03227 1.0kb upstream 1.0kb upstream 1000 false A03: 16344369-16345368 Brassica rapa FPsc
Brara.C03227 1.0kb downstream 1.0kb downstream 2570 true A03: 16341799-16344368 Brassica rapa FPsc
Brara.C03227 1.0kb downstream 1.0kb downstream 1000 false A03: 16341799-16342798 Brassica rapa FPsc
Brara.C03227 2.0kb upstream 2.0kb upstream 3570 true A03: 16342799-16346368 Brassica rapa FPsc
Brara.C03227 2.0kb upstream 2.0kb upstream 2000 false A03: 16344369-16346368 Brassica rapa FPsc
Brara.C03227 2.0kb downstream 2.0kb downstream 3570 true A03: 16340799-16344368 Brassica rapa FPsc
Brara.C03227 2.0kb downstream 2.0kb downstream 2000 false A03: 16340799-16342798 Brassica rapa FPsc
Brara.C03227 5.0kb upstream 5.0kb upstream 6570 true A03: 16342799-16349368 Brassica rapa FPsc
Brara.C03227 5.0kb upstream 5.0kb upstream 5000 false A03: 16344369-16349368 Brassica rapa FPsc
Brara.C03227 5.0kb downstream 5.0kb downstream 6570 true A03: 16337799-16344368 Brassica rapa FPsc
Brara.C03227 5.0kb downstream 5.0kb downstream 5000 false A03: 16337799-16342798 Brassica rapa FPsc
Brara.C03227 10.0kb upstream 10.0kb upstream 11570 true A03: 16342799-16354368 Brassica rapa FPsc
Brara.C03227 10.0kb upstream 10.0kb upstream 10000 false A03: 16344369-16354368 Brassica rapa FPsc
Brara.C03227 10.0kb downstream 10.0kb downstream 11570 true A03: 16332799-16344368 Brassica rapa FPsc
Brara.C03227 10.0kb downstream 10.0kb downstream 10000 false A03: 16332799-16342798 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122347400 5261 Brassicaceae Singleton cluster - no MSA
123841196 5264 Brassicales-Malvales View MSA
124349703 5266 SBM View MSA
124252748 5268 Malvidae View MSA
124074380 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier