Gene : Brara.C03228 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR31375:SF37 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Genomic Order:  3228
Name:  ? Brara.C03228 Secondary Identifier:  ? PAC:30617996
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C03228 0.5kb upstream 0.5kb upstream 2336 true A03: 16348030-16350365 Brassica rapa FPsc
Brara.C03228 0.5kb upstream 0.5kb upstream 500 false A03: 16349866-16350365 Brassica rapa FPsc
Brara.C03228 0.5kb downstream 0.5kb downstream 2336 true A03: 16347530-16349865 Brassica rapa FPsc
Brara.C03228 0.5kb downstream 0.5kb downstream 500 false A03: 16347530-16348029 Brassica rapa FPsc
Brara.C03228 1.0kb upstream 1.0kb upstream 2836 true A03: 16348030-16350865 Brassica rapa FPsc
Brara.C03228 1.0kb upstream 1.0kb upstream 1000 false A03: 16349866-16350865 Brassica rapa FPsc
Brara.C03228 1.0kb downstream 1.0kb downstream 2836 true A03: 16347030-16349865 Brassica rapa FPsc
Brara.C03228 1.0kb downstream 1.0kb downstream 1000 false A03: 16347030-16348029 Brassica rapa FPsc
Brara.C03228 2.0kb upstream 2.0kb upstream 3836 true A03: 16348030-16351865 Brassica rapa FPsc
Brara.C03228 2.0kb upstream 2.0kb upstream 2000 false A03: 16349866-16351865 Brassica rapa FPsc
Brara.C03228 2.0kb downstream 2.0kb downstream 3836 true A03: 16346030-16349865 Brassica rapa FPsc
Brara.C03228 2.0kb downstream 2.0kb downstream 2000 false A03: 16346030-16348029 Brassica rapa FPsc
Brara.C03228 5.0kb upstream 5.0kb upstream 6836 true A03: 16348030-16354865 Brassica rapa FPsc
Brara.C03228 5.0kb upstream 5.0kb upstream 5000 false A03: 16349866-16354865 Brassica rapa FPsc
Brara.C03228 5.0kb downstream 5.0kb downstream 6836 true A03: 16343030-16349865 Brassica rapa FPsc
Brara.C03228 5.0kb downstream 5.0kb downstream 5000 false A03: 16343030-16348029 Brassica rapa FPsc
Brara.C03228 10.0kb upstream 10.0kb upstream 11836 true A03: 16348030-16359865 Brassica rapa FPsc
Brara.C03228 10.0kb upstream 10.0kb upstream 10000 false A03: 16349866-16359865 Brassica rapa FPsc
Brara.C03228 10.0kb downstream 10.0kb downstream 11836 true A03: 16338030-16349865 Brassica rapa FPsc
Brara.C03228 10.0kb downstream 10.0kb downstream 10000 false A03: 16338030-16348029 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379002 5261 Brassicaceae View MSA
123802061 5264 Brassicales-Malvales View MSA
124299284 5266 SBM View MSA
124252748 5268 Malvidae View MSA
124074380 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier