Gene : Brara.E03420 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR12760 - TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  3420
Name:  ? Brara.E03420 Secondary Identifier:  ? PAC:30626542
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.E03420 0.5kb upstream 0.5kb upstream 3311 true A05: 27263500-27266810 Brassica rapa FPsc
Brara.E03420 0.5kb upstream 0.5kb upstream 500 false A05: 27266311-27266810 Brassica rapa FPsc
Brara.E03420 0.5kb downstream 0.5kb downstream 3311 true A05: 27263000-27266310 Brassica rapa FPsc
Brara.E03420 0.5kb downstream 0.5kb downstream 500 false A05: 27263000-27263499 Brassica rapa FPsc
Brara.E03420 1.0kb upstream 1.0kb upstream 3811 true A05: 27263500-27267310 Brassica rapa FPsc
Brara.E03420 1.0kb upstream 1.0kb upstream 1000 false A05: 27266311-27267310 Brassica rapa FPsc
Brara.E03420 1.0kb downstream 1.0kb downstream 3811 true A05: 27262500-27266310 Brassica rapa FPsc
Brara.E03420 1.0kb downstream 1.0kb downstream 1000 false A05: 27262500-27263499 Brassica rapa FPsc
Brara.E03420 2.0kb upstream 2.0kb upstream 4811 true A05: 27263500-27268310 Brassica rapa FPsc
Brara.E03420 2.0kb upstream 2.0kb upstream 2000 false A05: 27266311-27268310 Brassica rapa FPsc
Brara.E03420 2.0kb downstream 2.0kb downstream 4811 true A05: 27261500-27266310 Brassica rapa FPsc
Brara.E03420 2.0kb downstream 2.0kb downstream 2000 false A05: 27261500-27263499 Brassica rapa FPsc
Brara.E03420 5.0kb upstream 5.0kb upstream 7811 true A05: 27263500-27271310 Brassica rapa FPsc
Brara.E03420 5.0kb upstream 5.0kb upstream 5000 false A05: 27266311-27271310 Brassica rapa FPsc
Brara.E03420 5.0kb downstream 5.0kb downstream 7811 true A05: 27258500-27266310 Brassica rapa FPsc
Brara.E03420 5.0kb downstream 5.0kb downstream 5000 false A05: 27258500-27263499 Brassica rapa FPsc
Brara.E03420 10.0kb upstream 10.0kb upstream 12811 true A05: 27263500-27276310 Brassica rapa FPsc
Brara.E03420 10.0kb upstream 10.0kb upstream 10000 false A05: 27266311-27276310 Brassica rapa FPsc
Brara.E03420 10.0kb downstream 10.0kb downstream 12811 true A05: 27253500-27266310 Brassica rapa FPsc
Brara.E03420 10.0kb downstream 10.0kb downstream 10000 false A05: 27253500-27263499 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122349817 5261 Brassicaceae Singleton cluster - no MSA
123788942 5264 Brassicales-Malvales Singleton cluster - no MSA
124286955 5266 SBM Singleton cluster - no MSA
124140724 5268 Malvidae Singleton cluster - no MSA
123867891 5270 Rosid Singleton cluster - no MSA
123452677 5271 Pentapetalae Singleton cluster - no MSA
122488161 5272 Eudicot Singleton cluster - no MSA
122047894 5273 Angiosperm View MSA
121346659 5274 Embryophyte View MSA
123424926 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier