Gene : Brara.K01600 B. rapa FPsc v1.3
Defline:  (1 of 47) PF03108//PF04434//PF10551 - MuDR family transposase (DBD_Tnp_Mut) // SWIM zinc finger (SWIM) // MULE transposase domain (MULE) Genomic Order:  3
Name:  ? Brara.K01600 Secondary Identifier:  ? PAC:30636129
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K01600 0.5kb upstream 0.5kb upstream 2957 true Scaffold77208: 8182-11138 Brassica rapa FPsc
Brara.K01600 0.5kb upstream 0.5kb upstream 500 false Scaffold77208: 10639-11138 Brassica rapa FPsc
Brara.K01600 0.5kb downstream 0.5kb downstream 2957 true Scaffold77208: 7682-10638 Brassica rapa FPsc
Brara.K01600 0.5kb downstream 0.5kb downstream 500 false Scaffold77208: 7682-8181 Brassica rapa FPsc
Brara.K01600 1.0kb upstream 1.0kb upstream 3338 true Scaffold77208: 8182-11519 Brassica rapa FPsc
Brara.K01600 1.0kb upstream 1.0kb upstream 881 false Scaffold77208: 10639-11519 Brassica rapa FPsc
Brara.K01600 1.0kb downstream 1.0kb downstream 3457 true Scaffold77208: 7182-10638 Brassica rapa FPsc
Brara.K01600 1.0kb downstream 1.0kb downstream 1000 false Scaffold77208: 7182-8181 Brassica rapa FPsc
Brara.K01600 2.0kb upstream 2.0kb upstream 3338 true Scaffold77208: 8182-11519 Brassica rapa FPsc
Brara.K01600 2.0kb upstream 2.0kb upstream 881 false Scaffold77208: 10639-11519 Brassica rapa FPsc
Brara.K01600 2.0kb downstream 2.0kb downstream 4457 true Scaffold77208: 6182-10638 Brassica rapa FPsc
Brara.K01600 2.0kb downstream 2.0kb downstream 2000 false Scaffold77208: 6182-8181 Brassica rapa FPsc
Brara.K01600 5.0kb upstream 5.0kb upstream 3338 true Scaffold77208: 8182-11519 Brassica rapa FPsc
Brara.K01600 5.0kb upstream 5.0kb upstream 881 false Scaffold77208: 10639-11519 Brassica rapa FPsc
Brara.K01600 5.0kb downstream 5.0kb downstream 7457 true Scaffold77208: 3182-10638 Brassica rapa FPsc
Brara.K01600 5.0kb downstream 5.0kb downstream 5000 false Scaffold77208: 3182-8181 Brassica rapa FPsc
Brara.K01600 10.0kb upstream 10.0kb upstream 3338 true Scaffold77208: 8182-11519 Brassica rapa FPsc
Brara.K01600 10.0kb upstream 10.0kb upstream 881 false Scaffold77208: 10639-11519 Brassica rapa FPsc
Brara.K01600 10.0kb downstream 10.0kb downstream 10638 true Scaffold77208: 1-10638 Brassica rapa FPsc
Brara.K01600 10.0kb downstream 10.0kb downstream 8181 false Scaffold77208: 1-8181 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380038 5261 Brassicaceae View MSA
123842361 5264 Brassicales-Malvales View MSA
124323430 5266 SBM View MSA
124169464 5268 Malvidae View MSA
124041733 5270 Rosid View MSA
123753345 5271 Pentapetalae View MSA
122797917 5272 Eudicot View MSA
122051679 5273 Angiosperm View MSA
121351767 5274 Embryophyte View MSA
123382313 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier