Gene : Brara.K01666 B. rapa FPsc v1.3
Defline:  (1 of 5) 6.1.1.12 - Aspartate--tRNA ligase / Aspartyl-tRNA synthetase Genomic Order:  32
Name:  ? Brara.K01666 Secondary Identifier:  ? PAC:30623387
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K01666 0.5kb upstream 0.5kb upstream 2911 true Scaffold81280: 205592-208502 Brassica rapa FPsc
Brara.K01666 0.5kb upstream 0.5kb upstream 500 false Scaffold81280: 208003-208502 Brassica rapa FPsc
Brara.K01666 0.5kb downstream 0.5kb downstream 2911 true Scaffold81280: 205092-208002 Brassica rapa FPsc
Brara.K01666 0.5kb downstream 0.5kb downstream 500 false Scaffold81280: 205092-205591 Brassica rapa FPsc
Brara.K01666 1.0kb upstream 1.0kb upstream 3411 true Scaffold81280: 205592-209002 Brassica rapa FPsc
Brara.K01666 1.0kb upstream 1.0kb upstream 1000 false Scaffold81280: 208003-209002 Brassica rapa FPsc
Brara.K01666 1.0kb downstream 1.0kb downstream 3411 true Scaffold81280: 204592-208002 Brassica rapa FPsc
Brara.K01666 1.0kb downstream 1.0kb downstream 1000 false Scaffold81280: 204592-205591 Brassica rapa FPsc
Brara.K01666 2.0kb upstream 2.0kb upstream 4411 true Scaffold81280: 205592-210002 Brassica rapa FPsc
Brara.K01666 2.0kb upstream 2.0kb upstream 2000 false Scaffold81280: 208003-210002 Brassica rapa FPsc
Brara.K01666 2.0kb downstream 2.0kb downstream 4411 true Scaffold81280: 203592-208002 Brassica rapa FPsc
Brara.K01666 2.0kb downstream 2.0kb downstream 2000 false Scaffold81280: 203592-205591 Brassica rapa FPsc
Brara.K01666 5.0kb upstream 5.0kb upstream 6920 true Scaffold81280: 205592-212511 Brassica rapa FPsc
Brara.K01666 5.0kb upstream 5.0kb upstream 4509 false Scaffold81280: 208003-212511 Brassica rapa FPsc
Brara.K01666 5.0kb downstream 5.0kb downstream 7411 true Scaffold81280: 200592-208002 Brassica rapa FPsc
Brara.K01666 5.0kb downstream 5.0kb downstream 5000 false Scaffold81280: 200592-205591 Brassica rapa FPsc
Brara.K01666 10.0kb upstream 10.0kb upstream 6920 true Scaffold81280: 205592-212511 Brassica rapa FPsc
Brara.K01666 10.0kb upstream 10.0kb upstream 4509 false Scaffold81280: 208003-212511 Brassica rapa FPsc
Brara.K01666 10.0kb downstream 10.0kb downstream 12411 true Scaffold81280: 195592-208002 Brassica rapa FPsc
Brara.K01666 10.0kb downstream 10.0kb downstream 10000 false Scaffold81280: 195592-205591 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373469 5261 Brassicaceae View MSA
123830124 5264 Brassicales-Malvales View MSA
124340774 5266 SBM View MSA
124240572 5268 Malvidae View MSA
124066804 5270 Rosid View MSA
123746132 5271 Pentapetalae View MSA
122792438 5272 Eudicot View MSA
122047949 5273 Angiosperm View MSA
121349506 5274 Embryophyte View MSA
123428007 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier