Gene : Brara.K01780 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11440:SF3 - LECITHIN-CHOLESTEROL ACYLTRANSFERASE-LIKE 4 Genomic Order:  40
Name:  ? Brara.K01780 Secondary Identifier:  ? PAC:30611222
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc LIPASYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6803 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K01780 0.5kb upstream 0.5kb upstream 2877 true Scaffold87669: 318255-321131 Brassica rapa FPsc
Brara.K01780 0.5kb upstream 0.5kb upstream 500 false Scaffold87669: 320632-321131 Brassica rapa FPsc
Brara.K01780 0.5kb downstream 0.5kb downstream 2877 true Scaffold87669: 317755-320631 Brassica rapa FPsc
Brara.K01780 0.5kb downstream 0.5kb downstream 500 false Scaffold87669: 317755-318254 Brassica rapa FPsc
Brara.K01780 1.0kb upstream 1.0kb upstream 3377 true Scaffold87669: 318255-321631 Brassica rapa FPsc
Brara.K01780 1.0kb upstream 1.0kb upstream 1000 false Scaffold87669: 320632-321631 Brassica rapa FPsc
Brara.K01780 1.0kb downstream 1.0kb downstream 3377 true Scaffold87669: 317255-320631 Brassica rapa FPsc
Brara.K01780 1.0kb downstream 1.0kb downstream 1000 false Scaffold87669: 317255-318254 Brassica rapa FPsc
Brara.K01780 2.0kb upstream 2.0kb upstream 4377 true Scaffold87669: 318255-322631 Brassica rapa FPsc
Brara.K01780 2.0kb upstream 2.0kb upstream 2000 false Scaffold87669: 320632-322631 Brassica rapa FPsc
Brara.K01780 2.0kb downstream 2.0kb downstream 4377 true Scaffold87669: 316255-320631 Brassica rapa FPsc
Brara.K01780 2.0kb downstream 2.0kb downstream 2000 false Scaffold87669: 316255-318254 Brassica rapa FPsc
Brara.K01780 5.0kb upstream 5.0kb upstream 7377 true Scaffold87669: 318255-325631 Brassica rapa FPsc
Brara.K01780 5.0kb upstream 5.0kb upstream 5000 false Scaffold87669: 320632-325631 Brassica rapa FPsc
Brara.K01780 5.0kb downstream 5.0kb downstream 7377 true Scaffold87669: 313255-320631 Brassica rapa FPsc
Brara.K01780 5.0kb downstream 5.0kb downstream 5000 false Scaffold87669: 313255-318254 Brassica rapa FPsc
Brara.K01780 10.0kb upstream 10.0kb upstream 12377 true Scaffold87669: 318255-330631 Brassica rapa FPsc
Brara.K01780 10.0kb upstream 10.0kb upstream 10000 false Scaffold87669: 320632-330631 Brassica rapa FPsc
Brara.K01780 10.0kb downstream 10.0kb downstream 12377 true Scaffold87669: 308255-320631 Brassica rapa FPsc
Brara.K01780 10.0kb downstream 10.0kb downstream 10000 false Scaffold87669: 308255-318254 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041263 5273 Angiosperm View MSA
122366615 5261 Brassicaceae View MSA
123832035 5264 Brassicales-Malvales View MSA
124345195 5266 SBM View MSA
124237859 5268 Malvidae View MSA
124061879 5270 Rosid View MSA
123744948 5271 Pentapetalae View MSA
122787673 5272 Eudicot View MSA
121345850 5274 Embryophyte View MSA
123380278 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier