Gene : Brara.C03003 B. rapa FPsc v1.3
Defline:  (1 of 5) 6.1.1.1 - Tyrosine--tRNA ligase / Tyrosyl-tRNA synthetase Genomic Order:  3003
Name:  ? Brara.C03003 Secondary Identifier:  ? PAC:30618308
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C03003 0.5kb upstream 0.5kb upstream 2608 true A03: 15301008-15303615 Brassica rapa FPsc
Brara.C03003 0.5kb upstream 0.5kb upstream 500 false A03: 15303116-15303615 Brassica rapa FPsc
Brara.C03003 0.5kb downstream 0.5kb downstream 2608 true A03: 15300508-15303115 Brassica rapa FPsc
Brara.C03003 0.5kb downstream 0.5kb downstream 500 false A03: 15300508-15301007 Brassica rapa FPsc
Brara.C03003 1.0kb upstream 1.0kb upstream 3108 true A03: 15301008-15304115 Brassica rapa FPsc
Brara.C03003 1.0kb upstream 1.0kb upstream 1000 false A03: 15303116-15304115 Brassica rapa FPsc
Brara.C03003 1.0kb downstream 1.0kb downstream 3108 true A03: 15300008-15303115 Brassica rapa FPsc
Brara.C03003 1.0kb downstream 1.0kb downstream 1000 false A03: 15300008-15301007 Brassica rapa FPsc
Brara.C03003 2.0kb upstream 2.0kb upstream 4108 true A03: 15301008-15305115 Brassica rapa FPsc
Brara.C03003 2.0kb upstream 2.0kb upstream 2000 false A03: 15303116-15305115 Brassica rapa FPsc
Brara.C03003 2.0kb downstream 2.0kb downstream 4108 true A03: 15299008-15303115 Brassica rapa FPsc
Brara.C03003 2.0kb downstream 2.0kb downstream 2000 false A03: 15299008-15301007 Brassica rapa FPsc
Brara.C03003 5.0kb upstream 5.0kb upstream 7108 true A03: 15301008-15308115 Brassica rapa FPsc
Brara.C03003 5.0kb upstream 5.0kb upstream 5000 false A03: 15303116-15308115 Brassica rapa FPsc
Brara.C03003 5.0kb downstream 5.0kb downstream 7108 true A03: 15296008-15303115 Brassica rapa FPsc
Brara.C03003 5.0kb downstream 5.0kb downstream 5000 false A03: 15296008-15301007 Brassica rapa FPsc
Brara.C03003 10.0kb upstream 10.0kb upstream 12108 true A03: 15301008-15313115 Brassica rapa FPsc
Brara.C03003 10.0kb upstream 10.0kb upstream 10000 false A03: 15303116-15313115 Brassica rapa FPsc
Brara.C03003 10.0kb downstream 10.0kb downstream 12108 true A03: 15291008-15303115 Brassica rapa FPsc
Brara.C03003 10.0kb downstream 10.0kb downstream 10000 false A03: 15291008-15301007 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122347746 5261 Brassicaceae Singleton cluster - no MSA
123787218 5264 Brassicales-Malvales Singleton cluster - no MSA
124350440 5266 SBM View MSA
124241597 5268 Malvidae View MSA
124066531 5270 Rosid View MSA
123740976 5271 Pentapetalae View MSA
122788187 5272 Eudicot View MSA
122042111 5273 Angiosperm View MSA
121344516 5274 Embryophyte View MSA
123424944 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier