Gene : Brara.C03005 B. rapa FPsc v1.3
Defline:  (1 of 4) 6.1.1.21 - Histidine--tRNA ligase / Histidyl-tRNA synthetase Genomic Order:  3005
Name:  ? Brara.C03005 Secondary Identifier:  ? PAC:30616374
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C03005 0.5kb upstream 0.5kb upstream 3494 true A03: 15307828-15311321 Brassica rapa FPsc
Brara.C03005 0.5kb upstream 0.5kb upstream 500 false A03: 15310822-15311321 Brassica rapa FPsc
Brara.C03005 0.5kb downstream 0.5kb downstream 3494 true A03: 15307328-15310821 Brassica rapa FPsc
Brara.C03005 0.5kb downstream 0.5kb downstream 500 false A03: 15307328-15307827 Brassica rapa FPsc
Brara.C03005 1.0kb upstream 1.0kb upstream 3994 true A03: 15307828-15311821 Brassica rapa FPsc
Brara.C03005 1.0kb upstream 1.0kb upstream 1000 false A03: 15310822-15311821 Brassica rapa FPsc
Brara.C03005 1.0kb downstream 1.0kb downstream 3994 true A03: 15306828-15310821 Brassica rapa FPsc
Brara.C03005 1.0kb downstream 1.0kb downstream 1000 false A03: 15306828-15307827 Brassica rapa FPsc
Brara.C03005 2.0kb upstream 2.0kb upstream 4994 true A03: 15307828-15312821 Brassica rapa FPsc
Brara.C03005 2.0kb upstream 2.0kb upstream 2000 false A03: 15310822-15312821 Brassica rapa FPsc
Brara.C03005 2.0kb downstream 2.0kb downstream 4994 true A03: 15305828-15310821 Brassica rapa FPsc
Brara.C03005 2.0kb downstream 2.0kb downstream 2000 false A03: 15305828-15307827 Brassica rapa FPsc
Brara.C03005 5.0kb upstream 5.0kb upstream 7994 true A03: 15307828-15315821 Brassica rapa FPsc
Brara.C03005 5.0kb upstream 5.0kb upstream 5000 false A03: 15310822-15315821 Brassica rapa FPsc
Brara.C03005 5.0kb downstream 5.0kb downstream 7994 true A03: 15302828-15310821 Brassica rapa FPsc
Brara.C03005 5.0kb downstream 5.0kb downstream 5000 false A03: 15302828-15307827 Brassica rapa FPsc
Brara.C03005 10.0kb upstream 10.0kb upstream 12994 true A03: 15307828-15320821 Brassica rapa FPsc
Brara.C03005 10.0kb upstream 10.0kb upstream 10000 false A03: 15310822-15320821 Brassica rapa FPsc
Brara.C03005 10.0kb downstream 10.0kb downstream 12994 true A03: 15297828-15310821 Brassica rapa FPsc
Brara.C03005 10.0kb downstream 10.0kb downstream 10000 false A03: 15297828-15307827 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364327 5261 Brassicaceae View MSA
123830698 5264 Brassicales-Malvales View MSA
124337694 5266 SBM View MSA
124242303 5268 Malvidae View MSA
124074510 5270 Rosid View MSA
123750553 5271 Pentapetalae View MSA
122793881 5272 Eudicot View MSA
122047537 5273 Angiosperm View MSA
121349127 5274 Embryophyte View MSA
123427860 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier