Gene : Brara.C03519 B. rapa FPsc v1.3
Defline:  (1 of 5) PTHR31707:SF55 - PECTINESTERASE 2-RELATED Genomic Order:  3519
Name:  ? Brara.C03519 Secondary Identifier:  ? PAC:30615089
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C03519 0.5kb upstream 0.5kb upstream 6789 true A03: 17880513-17887301 Brassica rapa FPsc
Brara.C03519 0.5kb upstream 0.5kb upstream 500 false A03: 17886802-17887301 Brassica rapa FPsc
Brara.C03519 0.5kb downstream 0.5kb downstream 6789 true A03: 17880013-17886801 Brassica rapa FPsc
Brara.C03519 0.5kb downstream 0.5kb downstream 500 false A03: 17880013-17880512 Brassica rapa FPsc
Brara.C03519 1.0kb upstream 1.0kb upstream 7289 true A03: 17880513-17887801 Brassica rapa FPsc
Brara.C03519 1.0kb upstream 1.0kb upstream 1000 false A03: 17886802-17887801 Brassica rapa FPsc
Brara.C03519 1.0kb downstream 1.0kb downstream 7289 true A03: 17879513-17886801 Brassica rapa FPsc
Brara.C03519 1.0kb downstream 1.0kb downstream 1000 false A03: 17879513-17880512 Brassica rapa FPsc
Brara.C03519 2.0kb upstream 2.0kb upstream 8289 true A03: 17880513-17888801 Brassica rapa FPsc
Brara.C03519 2.0kb upstream 2.0kb upstream 2000 false A03: 17886802-17888801 Brassica rapa FPsc
Brara.C03519 2.0kb downstream 2.0kb downstream 8289 true A03: 17878513-17886801 Brassica rapa FPsc
Brara.C03519 2.0kb downstream 2.0kb downstream 2000 false A03: 17878513-17880512 Brassica rapa FPsc
Brara.C03519 5.0kb upstream 5.0kb upstream 11289 true A03: 17880513-17891801 Brassica rapa FPsc
Brara.C03519 5.0kb upstream 5.0kb upstream 5000 false A03: 17886802-17891801 Brassica rapa FPsc
Brara.C03519 5.0kb downstream 5.0kb downstream 11289 true A03: 17875513-17886801 Brassica rapa FPsc
Brara.C03519 5.0kb downstream 5.0kb downstream 5000 false A03: 17875513-17880512 Brassica rapa FPsc
Brara.C03519 10.0kb upstream 10.0kb upstream 16289 true A03: 17880513-17896801 Brassica rapa FPsc
Brara.C03519 10.0kb upstream 10.0kb upstream 10000 false A03: 17886802-17896801 Brassica rapa FPsc
Brara.C03519 10.0kb downstream 10.0kb downstream 16289 true A03: 17870513-17886801 Brassica rapa FPsc
Brara.C03519 10.0kb downstream 10.0kb downstream 10000 false A03: 17870513-17880512 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122346848 5261 Brassicaceae Singleton cluster - no MSA
123786477 5264 Brassicales-Malvales Singleton cluster - no MSA
124284583 5266 SBM Singleton cluster - no MSA
124138772 5268 Malvidae Singleton cluster - no MSA
123866272 5270 Rosid Singleton cluster - no MSA
123451318 5271 Pentapetalae Singleton cluster - no MSA
122486827 5272 Eudicot Singleton cluster - no MSA
122051530 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier