Gene : Brara.F00011 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR10920:SF12 - TRNA (CYTIDINE(32)/GUANOSINE(34)-2'-O)-METHYLTRANSFERASE-RELATED Genomic Order:  11
Name:  ? Brara.F00011 Secondary Identifier:  ? PAC:30630359
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6829 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F00011 0.5kb upstream 0.5kb upstream 3351 true A06: 92292-95642 Brassica rapa FPsc
Brara.F00011 0.5kb upstream 0.5kb upstream 500 false A06: 95143-95642 Brassica rapa FPsc
Brara.F00011 0.5kb downstream 0.5kb downstream 3351 true A06: 91792-95142 Brassica rapa FPsc
Brara.F00011 0.5kb downstream 0.5kb downstream 500 false A06: 91792-92291 Brassica rapa FPsc
Brara.F00011 1.0kb upstream 1.0kb upstream 3851 true A06: 92292-96142 Brassica rapa FPsc
Brara.F00011 1.0kb upstream 1.0kb upstream 1000 false A06: 95143-96142 Brassica rapa FPsc
Brara.F00011 1.0kb downstream 1.0kb downstream 3851 true A06: 91292-95142 Brassica rapa FPsc
Brara.F00011 1.0kb downstream 1.0kb downstream 1000 false A06: 91292-92291 Brassica rapa FPsc
Brara.F00011 2.0kb upstream 2.0kb upstream 4851 true A06: 92292-97142 Brassica rapa FPsc
Brara.F00011 2.0kb upstream 2.0kb upstream 2000 false A06: 95143-97142 Brassica rapa FPsc
Brara.F00011 2.0kb downstream 2.0kb downstream 4851 true A06: 90292-95142 Brassica rapa FPsc
Brara.F00011 2.0kb downstream 2.0kb downstream 2000 false A06: 90292-92291 Brassica rapa FPsc
Brara.F00011 5.0kb upstream 5.0kb upstream 7851 true A06: 92292-100142 Brassica rapa FPsc
Brara.F00011 5.0kb upstream 5.0kb upstream 5000 false A06: 95143-100142 Brassica rapa FPsc
Brara.F00011 5.0kb downstream 5.0kb downstream 7851 true A06: 87292-95142 Brassica rapa FPsc
Brara.F00011 5.0kb downstream 5.0kb downstream 5000 false A06: 87292-92291 Brassica rapa FPsc
Brara.F00011 10.0kb upstream 10.0kb upstream 12851 true A06: 92292-105142 Brassica rapa FPsc
Brara.F00011 10.0kb upstream 10.0kb upstream 10000 false A06: 95143-105142 Brassica rapa FPsc
Brara.F00011 10.0kb downstream 10.0kb downstream 12851 true A06: 82292-95142 Brassica rapa FPsc
Brara.F00011 10.0kb downstream 10.0kb downstream 10000 false A06: 82292-92291 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373668 5261 Brassicaceae View MSA
123831274 5264 Brassicales-Malvales View MSA
124345014 5266 SBM View MSA
124239012 5268 Malvidae View MSA
124067188 5270 Rosid View MSA
123742065 5271 Pentapetalae View MSA
122791552 5272 Eudicot View MSA
122044785 5273 Angiosperm View MSA
121347520 5274 Embryophyte View MSA
123424894 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier