Gene : Brara.F00397 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR23023:SF135 - INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA10-RELATED Genomic Order:  397
Name:  ? Brara.F00397 Secondary Identifier:  ? PAC:30629138
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWYDQC-4 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F00397 0.5kb upstream 0.5kb upstream 2777 true A06: 2372802-2375578 Brassica rapa FPsc
Brara.F00397 0.5kb upstream 0.5kb upstream 500 false A06: 2375079-2375578 Brassica rapa FPsc
Brara.F00397 0.5kb downstream 0.5kb downstream 2777 true A06: 2372302-2375078 Brassica rapa FPsc
Brara.F00397 0.5kb downstream 0.5kb downstream 500 false A06: 2372302-2372801 Brassica rapa FPsc
Brara.F00397 1.0kb upstream 1.0kb upstream 3277 true A06: 2372802-2376078 Brassica rapa FPsc
Brara.F00397 1.0kb upstream 1.0kb upstream 1000 false A06: 2375079-2376078 Brassica rapa FPsc
Brara.F00397 1.0kb downstream 1.0kb downstream 3277 true A06: 2371802-2375078 Brassica rapa FPsc
Brara.F00397 1.0kb downstream 1.0kb downstream 1000 false A06: 2371802-2372801 Brassica rapa FPsc
Brara.F00397 2.0kb upstream 2.0kb upstream 4277 true A06: 2372802-2377078 Brassica rapa FPsc
Brara.F00397 2.0kb upstream 2.0kb upstream 2000 false A06: 2375079-2377078 Brassica rapa FPsc
Brara.F00397 2.0kb downstream 2.0kb downstream 4277 true A06: 2370802-2375078 Brassica rapa FPsc
Brara.F00397 2.0kb downstream 2.0kb downstream 2000 false A06: 2370802-2372801 Brassica rapa FPsc
Brara.F00397 5.0kb upstream 5.0kb upstream 7277 true A06: 2372802-2380078 Brassica rapa FPsc
Brara.F00397 5.0kb upstream 5.0kb upstream 5000 false A06: 2375079-2380078 Brassica rapa FPsc
Brara.F00397 5.0kb downstream 5.0kb downstream 7277 true A06: 2367802-2375078 Brassica rapa FPsc
Brara.F00397 5.0kb downstream 5.0kb downstream 5000 false A06: 2367802-2372801 Brassica rapa FPsc
Brara.F00397 10.0kb upstream 10.0kb upstream 12277 true A06: 2372802-2385078 Brassica rapa FPsc
Brara.F00397 10.0kb upstream 10.0kb upstream 10000 false A06: 2375079-2385078 Brassica rapa FPsc
Brara.F00397 10.0kb downstream 10.0kb downstream 12277 true A06: 2362802-2375078 Brassica rapa FPsc
Brara.F00397 10.0kb downstream 10.0kb downstream 10000 false A06: 2362802-2372801 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364658 5261 Brassicaceae View MSA
123829988 5264 Brassicales-Malvales View MSA
124349496 5266 SBM View MSA
124250017 5268 Malvidae View MSA
124069751 5270 Rosid View MSA
123749752 5271 Pentapetalae View MSA
122794899 5272 Eudicot View MSA
122047342 5273 Angiosperm View MSA
121310731 5274 Embryophyte View MSA
123348144 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier