Gene : Brara.D00029 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR11088:SF30 - ADENYLATE ISOPENTENYLTRANSFERASE 3, CHLOROPLASTIC Genomic Order:  29
Name:  ? Brara.D00029 Secondary Identifier:  ? PAC:30621167
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-2681 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.D00029 0.5kb upstream 0.5kb upstream 1974 true A04: 178496-180469 Brassica rapa FPsc
Brara.D00029 0.5kb upstream 0.5kb upstream 500 false A04: 178496-178995 Brassica rapa FPsc
Brara.D00029 0.5kb downstream 0.5kb downstream 1974 true A04: 178996-180969 Brassica rapa FPsc
Brara.D00029 0.5kb downstream 0.5kb downstream 500 false A04: 180470-180969 Brassica rapa FPsc
Brara.D00029 1.0kb upstream 1.0kb upstream 2474 true A04: 177996-180469 Brassica rapa FPsc
Brara.D00029 1.0kb upstream 1.0kb upstream 1000 false A04: 177996-178995 Brassica rapa FPsc
Brara.D00029 1.0kb downstream 1.0kb downstream 2474 true A04: 178996-181469 Brassica rapa FPsc
Brara.D00029 1.0kb downstream 1.0kb downstream 1000 false A04: 180470-181469 Brassica rapa FPsc
Brara.D00029 2.0kb upstream 2.0kb upstream 3474 true A04: 176996-180469 Brassica rapa FPsc
Brara.D00029 2.0kb upstream 2.0kb upstream 2000 false A04: 176996-178995 Brassica rapa FPsc
Brara.D00029 2.0kb downstream 2.0kb downstream 3474 true A04: 178996-182469 Brassica rapa FPsc
Brara.D00029 2.0kb downstream 2.0kb downstream 2000 false A04: 180470-182469 Brassica rapa FPsc
Brara.D00029 5.0kb upstream 5.0kb upstream 6474 true A04: 173996-180469 Brassica rapa FPsc
Brara.D00029 5.0kb upstream 5.0kb upstream 5000 false A04: 173996-178995 Brassica rapa FPsc
Brara.D00029 5.0kb downstream 5.0kb downstream 6474 true A04: 178996-185469 Brassica rapa FPsc
Brara.D00029 5.0kb downstream 5.0kb downstream 5000 false A04: 180470-185469 Brassica rapa FPsc
Brara.D00029 10.0kb upstream 10.0kb upstream 11474 true A04: 168996-180469 Brassica rapa FPsc
Brara.D00029 10.0kb upstream 10.0kb upstream 10000 false A04: 168996-178995 Brassica rapa FPsc
Brara.D00029 10.0kb downstream 10.0kb downstream 11474 true A04: 178996-190469 Brassica rapa FPsc
Brara.D00029 10.0kb downstream 10.0kb downstream 10000 false A04: 180470-190469 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374525 5261 Brassicaceae View MSA
123836221 5264 Brassicales-Malvales View MSA
124350163 5266 SBM View MSA
124241505 5268 Malvidae View MSA
124062328 5270 Rosid View MSA
123742235 5271 Pentapetalae View MSA
122793817 5272 Eudicot View MSA
122042275 5273 Angiosperm View MSA
121309945 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier