Gene : Brara.C04444 B. rapa FPsc v1.3
Defline:  (1 of 4) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  4444
Name:  ? Brara.C04444 Secondary Identifier:  ? PAC:30615989
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7560 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C04444 0.5kb upstream 0.5kb upstream 3711 true A03: 23433305-23437015 Brassica rapa FPsc
Brara.C04444 0.5kb upstream 0.5kb upstream 500 false A03: 23433305-23433804 Brassica rapa FPsc
Brara.C04444 0.5kb downstream 0.5kb downstream 3711 true A03: 23433805-23437515 Brassica rapa FPsc
Brara.C04444 0.5kb downstream 0.5kb downstream 500 false A03: 23437016-23437515 Brassica rapa FPsc
Brara.C04444 1.0kb upstream 1.0kb upstream 4211 true A03: 23432805-23437015 Brassica rapa FPsc
Brara.C04444 1.0kb upstream 1.0kb upstream 1000 false A03: 23432805-23433804 Brassica rapa FPsc
Brara.C04444 1.0kb downstream 1.0kb downstream 4211 true A03: 23433805-23438015 Brassica rapa FPsc
Brara.C04444 1.0kb downstream 1.0kb downstream 1000 false A03: 23437016-23438015 Brassica rapa FPsc
Brara.C04444 2.0kb upstream 2.0kb upstream 5211 true A03: 23431805-23437015 Brassica rapa FPsc
Brara.C04444 2.0kb upstream 2.0kb upstream 2000 false A03: 23431805-23433804 Brassica rapa FPsc
Brara.C04444 2.0kb downstream 2.0kb downstream 5211 true A03: 23433805-23439015 Brassica rapa FPsc
Brara.C04444 2.0kb downstream 2.0kb downstream 2000 false A03: 23437016-23439015 Brassica rapa FPsc
Brara.C04444 5.0kb upstream 5.0kb upstream 8211 true A03: 23428805-23437015 Brassica rapa FPsc
Brara.C04444 5.0kb upstream 5.0kb upstream 5000 false A03: 23428805-23433804 Brassica rapa FPsc
Brara.C04444 5.0kb downstream 5.0kb downstream 8211 true A03: 23433805-23442015 Brassica rapa FPsc
Brara.C04444 5.0kb downstream 5.0kb downstream 5000 false A03: 23437016-23442015 Brassica rapa FPsc
Brara.C04444 10.0kb upstream 10.0kb upstream 13211 true A03: 23423805-23437015 Brassica rapa FPsc
Brara.C04444 10.0kb upstream 10.0kb upstream 10000 false A03: 23423805-23433804 Brassica rapa FPsc
Brara.C04444 10.0kb downstream 10.0kb downstream 13211 true A03: 23433805-23447015 Brassica rapa FPsc
Brara.C04444 10.0kb downstream 10.0kb downstream 10000 false A03: 23437016-23447015 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369320 5261 Brassicaceae View MSA
123830613 5264 Brassicales-Malvales View MSA
124343663 5266 SBM View MSA
124239163 5268 Malvidae View MSA
124069132 5270 Rosid View MSA
123739716 5271 Pentapetalae View MSA
122785691 5272 Eudicot View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier