Gene : Brara.F00870 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR10683:SF10 - TRANSALDOLASE-LIKE PROTEIN Genomic Order:  870
Name:  ? Brara.F00870 Secondary Identifier:  ? PAC:30628090
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc NONOXIPENT-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PENTOSE-P-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5723 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F00870 0.5kb upstream 0.5kb upstream 3320 true A06: 4924772-4928091 Brassica rapa FPsc
Brara.F00870 0.5kb upstream 0.5kb upstream 500 false A06: 4927592-4928091 Brassica rapa FPsc
Brara.F00870 0.5kb downstream 0.5kb downstream 3320 true A06: 4924272-4927591 Brassica rapa FPsc
Brara.F00870 0.5kb downstream 0.5kb downstream 500 false A06: 4924272-4924771 Brassica rapa FPsc
Brara.F00870 1.0kb upstream 1.0kb upstream 3820 true A06: 4924772-4928591 Brassica rapa FPsc
Brara.F00870 1.0kb upstream 1.0kb upstream 1000 false A06: 4927592-4928591 Brassica rapa FPsc
Brara.F00870 1.0kb downstream 1.0kb downstream 3820 true A06: 4923772-4927591 Brassica rapa FPsc
Brara.F00870 1.0kb downstream 1.0kb downstream 1000 false A06: 4923772-4924771 Brassica rapa FPsc
Brara.F00870 2.0kb upstream 2.0kb upstream 4820 true A06: 4924772-4929591 Brassica rapa FPsc
Brara.F00870 2.0kb upstream 2.0kb upstream 2000 false A06: 4927592-4929591 Brassica rapa FPsc
Brara.F00870 2.0kb downstream 2.0kb downstream 4820 true A06: 4922772-4927591 Brassica rapa FPsc
Brara.F00870 2.0kb downstream 2.0kb downstream 2000 false A06: 4922772-4924771 Brassica rapa FPsc
Brara.F00870 5.0kb upstream 5.0kb upstream 7820 true A06: 4924772-4932591 Brassica rapa FPsc
Brara.F00870 5.0kb upstream 5.0kb upstream 5000 false A06: 4927592-4932591 Brassica rapa FPsc
Brara.F00870 5.0kb downstream 5.0kb downstream 7820 true A06: 4919772-4927591 Brassica rapa FPsc
Brara.F00870 5.0kb downstream 5.0kb downstream 5000 false A06: 4919772-4924771 Brassica rapa FPsc
Brara.F00870 10.0kb upstream 10.0kb upstream 12820 true A06: 4924772-4937591 Brassica rapa FPsc
Brara.F00870 10.0kb upstream 10.0kb upstream 10000 false A06: 4927592-4937591 Brassica rapa FPsc
Brara.F00870 10.0kb downstream 10.0kb downstream 12820 true A06: 4914772-4927591 Brassica rapa FPsc
Brara.F00870 10.0kb downstream 10.0kb downstream 10000 false A06: 4914772-4924771 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367260 5261 Brassicaceae View MSA
123834447 5264 Brassicales-Malvales View MSA
124345800 5266 SBM View MSA
124238554 5268 Malvidae View MSA
124061321 5270 Rosid View MSA
123737527 5271 Pentapetalae View MSA
122787081 5272 Eudicot View MSA
122043979 5273 Angiosperm View MSA
121346789 5274 Embryophyte View MSA
123424119 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier