Gene : Brara.F02562 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR20861:SF1 - HOMOSERINE KINASE Genomic Order:  2562
Name:  ? Brara.F02562 Secondary Identifier:  ? PAC:30629352
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc HOMOSER-THRESYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-3001 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-702 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-724 Brassica rapa FPsc pathologic  
BrapaFPsc THRESYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F02562 0.5kb upstream 0.5kb upstream 2118 true A06: 21419171-21421288 Brassica rapa FPsc
Brara.F02562 0.5kb upstream 0.5kb upstream 500 false A06: 21420789-21421288 Brassica rapa FPsc
Brara.F02562 0.5kb downstream 0.5kb downstream 2118 true A06: 21418671-21420788 Brassica rapa FPsc
Brara.F02562 0.5kb downstream 0.5kb downstream 500 false A06: 21418671-21419170 Brassica rapa FPsc
Brara.F02562 1.0kb upstream 1.0kb upstream 2618 true A06: 21419171-21421788 Brassica rapa FPsc
Brara.F02562 1.0kb upstream 1.0kb upstream 1000 false A06: 21420789-21421788 Brassica rapa FPsc
Brara.F02562 1.0kb downstream 1.0kb downstream 2618 true A06: 21418171-21420788 Brassica rapa FPsc
Brara.F02562 1.0kb downstream 1.0kb downstream 1000 false A06: 21418171-21419170 Brassica rapa FPsc
Brara.F02562 2.0kb upstream 2.0kb upstream 3618 true A06: 21419171-21422788 Brassica rapa FPsc
Brara.F02562 2.0kb upstream 2.0kb upstream 2000 false A06: 21420789-21422788 Brassica rapa FPsc
Brara.F02562 2.0kb downstream 2.0kb downstream 3618 true A06: 21417171-21420788 Brassica rapa FPsc
Brara.F02562 2.0kb downstream 2.0kb downstream 2000 false A06: 21417171-21419170 Brassica rapa FPsc
Brara.F02562 5.0kb upstream 5.0kb upstream 6618 true A06: 21419171-21425788 Brassica rapa FPsc
Brara.F02562 5.0kb upstream 5.0kb upstream 5000 false A06: 21420789-21425788 Brassica rapa FPsc
Brara.F02562 5.0kb downstream 5.0kb downstream 6618 true A06: 21414171-21420788 Brassica rapa FPsc
Brara.F02562 5.0kb downstream 5.0kb downstream 5000 false A06: 21414171-21419170 Brassica rapa FPsc
Brara.F02562 10.0kb upstream 10.0kb upstream 11618 true A06: 21419171-21430788 Brassica rapa FPsc
Brara.F02562 10.0kb upstream 10.0kb upstream 10000 false A06: 21420789-21430788 Brassica rapa FPsc
Brara.F02562 10.0kb downstream 10.0kb downstream 11618 true A06: 21409171-21420788 Brassica rapa FPsc
Brara.F02562 10.0kb downstream 10.0kb downstream 10000 false A06: 21409171-21419170 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122350479 5261 Brassicaceae Singleton cluster - no MSA
123789498 5264 Brassicales-Malvales Singleton cluster - no MSA
124287496 5266 SBM Singleton cluster - no MSA
124141168 5268 Malvidae Singleton cluster - no MSA
124063769 5270 Rosid View MSA
123740380 5271 Pentapetalae View MSA
122792807 5272 Eudicot View MSA
122044756 5273 Angiosperm View MSA
121343956 5274 Embryophyte View MSA
123424273 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier