Gene : Brara.G00261 B. rapa FPsc v1.3
Defline:  (1 of 20) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  261
Name:  ? Brara.G00261 Secondary Identifier:  ? PAC:30635517
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G00261 0.5kb upstream 0.5kb upstream 961 true A07: 2447514-2448474 Brassica rapa FPsc
Brara.G00261 0.5kb upstream 0.5kb upstream 500 false A07: 2447514-2448013 Brassica rapa FPsc
Brara.G00261 0.5kb downstream 0.5kb downstream 961 true A07: 2448014-2448974 Brassica rapa FPsc
Brara.G00261 0.5kb downstream 0.5kb downstream 500 false A07: 2448475-2448974 Brassica rapa FPsc
Brara.G00261 1.0kb upstream 1.0kb upstream 1461 true A07: 2447014-2448474 Brassica rapa FPsc
Brara.G00261 1.0kb upstream 1.0kb upstream 1000 false A07: 2447014-2448013 Brassica rapa FPsc
Brara.G00261 1.0kb downstream 1.0kb downstream 1461 true A07: 2448014-2449474 Brassica rapa FPsc
Brara.G00261 1.0kb downstream 1.0kb downstream 1000 false A07: 2448475-2449474 Brassica rapa FPsc
Brara.G00261 2.0kb upstream 2.0kb upstream 2461 true A07: 2446014-2448474 Brassica rapa FPsc
Brara.G00261 2.0kb upstream 2.0kb upstream 2000 false A07: 2446014-2448013 Brassica rapa FPsc
Brara.G00261 2.0kb downstream 2.0kb downstream 2461 true A07: 2448014-2450474 Brassica rapa FPsc
Brara.G00261 2.0kb downstream 2.0kb downstream 2000 false A07: 2448475-2450474 Brassica rapa FPsc
Brara.G00261 5.0kb upstream 5.0kb upstream 5461 true A07: 2443014-2448474 Brassica rapa FPsc
Brara.G00261 5.0kb upstream 5.0kb upstream 5000 false A07: 2443014-2448013 Brassica rapa FPsc
Brara.G00261 5.0kb downstream 5.0kb downstream 5461 true A07: 2448014-2453474 Brassica rapa FPsc
Brara.G00261 5.0kb downstream 5.0kb downstream 5000 false A07: 2448475-2453474 Brassica rapa FPsc
Brara.G00261 10.0kb upstream 10.0kb upstream 10461 true A07: 2438014-2448474 Brassica rapa FPsc
Brara.G00261 10.0kb upstream 10.0kb upstream 10000 false A07: 2438014-2448013 Brassica rapa FPsc
Brara.G00261 10.0kb downstream 10.0kb downstream 10461 true A07: 2448014-2458474 Brassica rapa FPsc
Brara.G00261 10.0kb downstream 10.0kb downstream 10000 false A07: 2448475-2458474 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362654 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier