Gene : Brara.G00957 B. rapa FPsc v1.3
Defline:  (1 of 6) 6.1.1.9 - Valine--tRNA ligase / Valyl-tRNA synthetase Genomic Order:  957
Name:  ? Brara.G00957 Secondary Identifier:  ? PAC:30632399
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G00957 0.5kb upstream 0.5kb upstream 2585 true A07: 11235754-11238338 Brassica rapa FPsc
Brara.G00957 0.5kb upstream 0.5kb upstream 500 false A07: 11237839-11238338 Brassica rapa FPsc
Brara.G00957 0.5kb downstream 0.5kb downstream 2585 true A07: 11235254-11237838 Brassica rapa FPsc
Brara.G00957 0.5kb downstream 0.5kb downstream 500 false A07: 11235254-11235753 Brassica rapa FPsc
Brara.G00957 1.0kb upstream 1.0kb upstream 3085 true A07: 11235754-11238838 Brassica rapa FPsc
Brara.G00957 1.0kb upstream 1.0kb upstream 1000 false A07: 11237839-11238838 Brassica rapa FPsc
Brara.G00957 1.0kb downstream 1.0kb downstream 3085 true A07: 11234754-11237838 Brassica rapa FPsc
Brara.G00957 1.0kb downstream 1.0kb downstream 1000 false A07: 11234754-11235753 Brassica rapa FPsc
Brara.G00957 2.0kb upstream 2.0kb upstream 4085 true A07: 11235754-11239838 Brassica rapa FPsc
Brara.G00957 2.0kb upstream 2.0kb upstream 2000 false A07: 11237839-11239838 Brassica rapa FPsc
Brara.G00957 2.0kb downstream 2.0kb downstream 4085 true A07: 11233754-11237838 Brassica rapa FPsc
Brara.G00957 2.0kb downstream 2.0kb downstream 2000 false A07: 11233754-11235753 Brassica rapa FPsc
Brara.G00957 5.0kb upstream 5.0kb upstream 7085 true A07: 11235754-11242838 Brassica rapa FPsc
Brara.G00957 5.0kb upstream 5.0kb upstream 5000 false A07: 11237839-11242838 Brassica rapa FPsc
Brara.G00957 5.0kb downstream 5.0kb downstream 7085 true A07: 11230754-11237838 Brassica rapa FPsc
Brara.G00957 5.0kb downstream 5.0kb downstream 5000 false A07: 11230754-11235753 Brassica rapa FPsc
Brara.G00957 10.0kb upstream 10.0kb upstream 12085 true A07: 11235754-11247838 Brassica rapa FPsc
Brara.G00957 10.0kb upstream 10.0kb upstream 10000 false A07: 11237839-11247838 Brassica rapa FPsc
Brara.G00957 10.0kb downstream 10.0kb downstream 12085 true A07: 11225754-11237838 Brassica rapa FPsc
Brara.G00957 10.0kb downstream 10.0kb downstream 10000 false A07: 11225754-11235753 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122351154 5261 Brassicaceae Singleton cluster - no MSA
123790078 5264 Brassicales-Malvales Singleton cluster - no MSA
124288051 5266 SBM Singleton cluster - no MSA
124251995 5268 Malvidae View MSA
124073581 5270 Rosid View MSA
123752070 5271 Pentapetalae View MSA
122788218 5272 Eudicot View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier