Gene : Brara.G02733 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR34790:SF1 - PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC Genomic Order:  2733
Name:  ? Brara.G02733 Secondary Identifier:  ? PAC:30632648
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PHOTOALL-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-101 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G02733 0.5kb upstream 0.5kb upstream 1439 true A07: 22207013-22208451 Brassica rapa FPsc
Brara.G02733 0.5kb upstream 0.5kb upstream 500 false A07: 22207952-22208451 Brassica rapa FPsc
Brara.G02733 0.5kb downstream 0.5kb downstream 1439 true A07: 22206513-22207951 Brassica rapa FPsc
Brara.G02733 0.5kb downstream 0.5kb downstream 500 false A07: 22206513-22207012 Brassica rapa FPsc
Brara.G02733 1.0kb upstream 1.0kb upstream 1939 true A07: 22207013-22208951 Brassica rapa FPsc
Brara.G02733 1.0kb upstream 1.0kb upstream 1000 false A07: 22207952-22208951 Brassica rapa FPsc
Brara.G02733 1.0kb downstream 1.0kb downstream 1939 true A07: 22206013-22207951 Brassica rapa FPsc
Brara.G02733 1.0kb downstream 1.0kb downstream 1000 false A07: 22206013-22207012 Brassica rapa FPsc
Brara.G02733 2.0kb upstream 2.0kb upstream 2939 true A07: 22207013-22209951 Brassica rapa FPsc
Brara.G02733 2.0kb upstream 2.0kb upstream 2000 false A07: 22207952-22209951 Brassica rapa FPsc
Brara.G02733 2.0kb downstream 2.0kb downstream 2939 true A07: 22205013-22207951 Brassica rapa FPsc
Brara.G02733 2.0kb downstream 2.0kb downstream 2000 false A07: 22205013-22207012 Brassica rapa FPsc
Brara.G02733 5.0kb upstream 5.0kb upstream 5939 true A07: 22207013-22212951 Brassica rapa FPsc
Brara.G02733 5.0kb upstream 5.0kb upstream 5000 false A07: 22207952-22212951 Brassica rapa FPsc
Brara.G02733 5.0kb downstream 5.0kb downstream 5939 true A07: 22202013-22207951 Brassica rapa FPsc
Brara.G02733 5.0kb downstream 5.0kb downstream 5000 false A07: 22202013-22207012 Brassica rapa FPsc
Brara.G02733 10.0kb upstream 10.0kb upstream 10939 true A07: 22207013-22217951 Brassica rapa FPsc
Brara.G02733 10.0kb upstream 10.0kb upstream 10000 false A07: 22207952-22217951 Brassica rapa FPsc
Brara.G02733 10.0kb downstream 10.0kb downstream 10939 true A07: 22197013-22207951 Brassica rapa FPsc
Brara.G02733 10.0kb downstream 10.0kb downstream 10000 false A07: 22197013-22207012 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122351209 5261 Brassicaceae Singleton cluster - no MSA
123790128 5264 Brassicales-Malvales Singleton cluster - no MSA
124288099 5266 SBM Singleton cluster - no MSA
124141675 5268 Malvidae Singleton cluster - no MSA
124068149 5270 Rosid View MSA
123737018 5271 Pentapetalae View MSA
122795977 5272 Eudicot View MSA
122044260 5273 Angiosperm View MSA
121349394 5274 Embryophyte View MSA
123426328 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier