Gene : Brara.H00016 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR23416:SF56 - SERINE ACETYLTRANSFERASE 1, CHLOROPLASTIC-RELATED Genomic Order:  16
Name:  ? Brara.H00016 Secondary Identifier:  ? PAC:30646992
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CYSTSYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6936 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H00016 0.5kb upstream 0.5kb upstream 1469 true A08: 146192-147660 Brassica rapa FPsc
Brara.H00016 0.5kb upstream 0.5kb upstream 500 false A08: 147161-147660 Brassica rapa FPsc
Brara.H00016 0.5kb downstream 0.5kb downstream 1469 true A08: 145692-147160 Brassica rapa FPsc
Brara.H00016 0.5kb downstream 0.5kb downstream 500 false A08: 145692-146191 Brassica rapa FPsc
Brara.H00016 1.0kb upstream 1.0kb upstream 1969 true A08: 146192-148160 Brassica rapa FPsc
Brara.H00016 1.0kb upstream 1.0kb upstream 1000 false A08: 147161-148160 Brassica rapa FPsc
Brara.H00016 1.0kb downstream 1.0kb downstream 1969 true A08: 145192-147160 Brassica rapa FPsc
Brara.H00016 1.0kb downstream 1.0kb downstream 1000 false A08: 145192-146191 Brassica rapa FPsc
Brara.H00016 2.0kb upstream 2.0kb upstream 2969 true A08: 146192-149160 Brassica rapa FPsc
Brara.H00016 2.0kb upstream 2.0kb upstream 2000 false A08: 147161-149160 Brassica rapa FPsc
Brara.H00016 2.0kb downstream 2.0kb downstream 2969 true A08: 144192-147160 Brassica rapa FPsc
Brara.H00016 2.0kb downstream 2.0kb downstream 2000 false A08: 144192-146191 Brassica rapa FPsc
Brara.H00016 5.0kb upstream 5.0kb upstream 5969 true A08: 146192-152160 Brassica rapa FPsc
Brara.H00016 5.0kb upstream 5.0kb upstream 5000 false A08: 147161-152160 Brassica rapa FPsc
Brara.H00016 5.0kb downstream 5.0kb downstream 5969 true A08: 141192-147160 Brassica rapa FPsc
Brara.H00016 5.0kb downstream 5.0kb downstream 5000 false A08: 141192-146191 Brassica rapa FPsc
Brara.H00016 10.0kb upstream 10.0kb upstream 10969 true A08: 146192-157160 Brassica rapa FPsc
Brara.H00016 10.0kb upstream 10.0kb upstream 10000 false A08: 147161-157160 Brassica rapa FPsc
Brara.H00016 10.0kb downstream 10.0kb downstream 10969 true A08: 136192-147160 Brassica rapa FPsc
Brara.H00016 10.0kb downstream 10.0kb downstream 10000 false A08: 136192-146191 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361676 5261 Brassicaceae View MSA
123798221 5264 Brassicales-Malvales View MSA
124295891 5266 SBM View MSA
124148202 5268 Malvidae View MSA
124069334 5270 Rosid View MSA
123751427 5271 Pentapetalae View MSA
122788280 5272 Eudicot View MSA
122045055 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier