Gene : Brara.I01425 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR10742:SF246 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 1 Genomic Order:  1425
Name:  ? Brara.I01425 Secondary Identifier:  ? PAC:30644099
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6441 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I01425 0.5kb upstream 0.5kb upstream 3096 true A09: 8862917-8866012 Brassica rapa FPsc
Brara.I01425 0.5kb upstream 0.5kb upstream 500 false A09: 8862917-8863416 Brassica rapa FPsc
Brara.I01425 0.5kb downstream 0.5kb downstream 3096 true A09: 8863417-8866512 Brassica rapa FPsc
Brara.I01425 0.5kb downstream 0.5kb downstream 500 false A09: 8866013-8866512 Brassica rapa FPsc
Brara.I01425 1.0kb upstream 1.0kb upstream 3596 true A09: 8862417-8866012 Brassica rapa FPsc
Brara.I01425 1.0kb upstream 1.0kb upstream 1000 false A09: 8862417-8863416 Brassica rapa FPsc
Brara.I01425 1.0kb downstream 1.0kb downstream 3596 true A09: 8863417-8867012 Brassica rapa FPsc
Brara.I01425 1.0kb downstream 1.0kb downstream 1000 false A09: 8866013-8867012 Brassica rapa FPsc
Brara.I01425 2.0kb upstream 2.0kb upstream 4596 true A09: 8861417-8866012 Brassica rapa FPsc
Brara.I01425 2.0kb upstream 2.0kb upstream 2000 false A09: 8861417-8863416 Brassica rapa FPsc
Brara.I01425 2.0kb downstream 2.0kb downstream 4596 true A09: 8863417-8868012 Brassica rapa FPsc
Brara.I01425 2.0kb downstream 2.0kb downstream 2000 false A09: 8866013-8868012 Brassica rapa FPsc
Brara.I01425 5.0kb upstream 5.0kb upstream 7596 true A09: 8858417-8866012 Brassica rapa FPsc
Brara.I01425 5.0kb upstream 5.0kb upstream 5000 false A09: 8858417-8863416 Brassica rapa FPsc
Brara.I01425 5.0kb downstream 5.0kb downstream 7596 true A09: 8863417-8871012 Brassica rapa FPsc
Brara.I01425 5.0kb downstream 5.0kb downstream 5000 false A09: 8866013-8871012 Brassica rapa FPsc
Brara.I01425 10.0kb upstream 10.0kb upstream 12596 true A09: 8853417-8866012 Brassica rapa FPsc
Brara.I01425 10.0kb upstream 10.0kb upstream 10000 false A09: 8853417-8863416 Brassica rapa FPsc
Brara.I01425 10.0kb downstream 10.0kb downstream 12596 true A09: 8863417-8876012 Brassica rapa FPsc
Brara.I01425 10.0kb downstream 10.0kb downstream 10000 false A09: 8866013-8876012 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376165 5261 Brassicaceae View MSA
123829326 5264 Brassicales-Malvales View MSA
124336608 5266 SBM View MSA
124249535 5268 Malvidae View MSA
124062162 5270 Rosid View MSA
123738234 5271 Pentapetalae View MSA
122786001 5272 Eudicot View MSA
122043910 5273 Angiosperm View MSA
121310209 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier