Gene : Brara.J01042 B. rapa FPsc v1.3
Defline:  (1 of 7) PTHR32266:SF12 - NICOTIANAMINE SYNTHASE-RELATED Genomic Order:  1042
Name:  ? Brara.J01042 Secondary Identifier:  ? PAC:30612832
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5957 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J01042 0.5kb upstream 0.5kb upstream 1727 true A10: 10106495-10108221 Brassica rapa FPsc
Brara.J01042 0.5kb upstream 0.5kb upstream 500 false A10: 10107722-10108221 Brassica rapa FPsc
Brara.J01042 0.5kb downstream 0.5kb downstream 1727 true A10: 10105995-10107721 Brassica rapa FPsc
Brara.J01042 0.5kb downstream 0.5kb downstream 500 false A10: 10105995-10106494 Brassica rapa FPsc
Brara.J01042 1.0kb upstream 1.0kb upstream 2227 true A10: 10106495-10108721 Brassica rapa FPsc
Brara.J01042 1.0kb upstream 1.0kb upstream 1000 false A10: 10107722-10108721 Brassica rapa FPsc
Brara.J01042 1.0kb downstream 1.0kb downstream 2227 true A10: 10105495-10107721 Brassica rapa FPsc
Brara.J01042 1.0kb downstream 1.0kb downstream 1000 false A10: 10105495-10106494 Brassica rapa FPsc
Brara.J01042 2.0kb upstream 2.0kb upstream 3227 true A10: 10106495-10109721 Brassica rapa FPsc
Brara.J01042 2.0kb upstream 2.0kb upstream 2000 false A10: 10107722-10109721 Brassica rapa FPsc
Brara.J01042 2.0kb downstream 2.0kb downstream 3227 true A10: 10104495-10107721 Brassica rapa FPsc
Brara.J01042 2.0kb downstream 2.0kb downstream 2000 false A10: 10104495-10106494 Brassica rapa FPsc
Brara.J01042 5.0kb upstream 5.0kb upstream 6227 true A10: 10106495-10112721 Brassica rapa FPsc
Brara.J01042 5.0kb upstream 5.0kb upstream 5000 false A10: 10107722-10112721 Brassica rapa FPsc
Brara.J01042 5.0kb downstream 5.0kb downstream 6227 true A10: 10101495-10107721 Brassica rapa FPsc
Brara.J01042 5.0kb downstream 5.0kb downstream 5000 false A10: 10101495-10106494 Brassica rapa FPsc
Brara.J01042 10.0kb upstream 10.0kb upstream 11227 true A10: 10106495-10117721 Brassica rapa FPsc
Brara.J01042 10.0kb upstream 10.0kb upstream 10000 false A10: 10107722-10117721 Brassica rapa FPsc
Brara.J01042 10.0kb downstream 10.0kb downstream 11227 true A10: 10096495-10107721 Brassica rapa FPsc
Brara.J01042 10.0kb downstream 10.0kb downstream 10000 false A10: 10096495-10106494 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369790 5261 Brassicaceae View MSA
123799845 5264 Brassicales-Malvales View MSA
124297326 5266 SBM View MSA
124149250 5268 Malvidae View MSA
124066045 5270 Rosid View MSA
123750791 5271 Pentapetalae View MSA
122792107 5272 Eudicot View MSA
122044478 5273 Angiosperm View MSA
121350055 5274 Embryophyte View MSA
123381558 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier