Gene : Brara.K00618 B. rapa FPsc v1.3
Defline:  (1 of 2) 2.1.1.142 - Cycloartenol 24-C-methyltransferase / Sterol C-methyltransferase Genomic Order:  1
Name:  ? Brara.K00618 Secondary Identifier:  ? PAC:30606601
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-2541 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K00618 0.5kb upstream 0.5kb upstream 1571 true Scaffold24205: 790-2360 Brassica rapa FPsc
Brara.K00618 0.5kb upstream 0.5kb upstream 500 false Scaffold24205: 790-1289 Brassica rapa FPsc
Brara.K00618 0.5kb downstream 0.5kb downstream 1417 true Scaffold24205: 1290-2706 Brassica rapa FPsc
Brara.K00618 0.5kb downstream 0.5kb downstream 346 false Scaffold24205: 2361-2706 Brassica rapa FPsc
Brara.K00618 1.0kb upstream 1.0kb upstream 2071 true Scaffold24205: 290-2360 Brassica rapa FPsc
Brara.K00618 1.0kb upstream 1.0kb upstream 1000 false Scaffold24205: 290-1289 Brassica rapa FPsc
Brara.K00618 1.0kb downstream 1.0kb downstream 1417 true Scaffold24205: 1290-2706 Brassica rapa FPsc
Brara.K00618 1.0kb downstream 1.0kb downstream 346 false Scaffold24205: 2361-2706 Brassica rapa FPsc
Brara.K00618 2.0kb upstream 2.0kb upstream 2360 true Scaffold24205: 1-2360 Brassica rapa FPsc
Brara.K00618 2.0kb upstream 2.0kb upstream 1289 false Scaffold24205: 1-1289 Brassica rapa FPsc
Brara.K00618 2.0kb downstream 2.0kb downstream 1417 true Scaffold24205: 1290-2706 Brassica rapa FPsc
Brara.K00618 2.0kb downstream 2.0kb downstream 346 false Scaffold24205: 2361-2706 Brassica rapa FPsc
Brara.K00618 5.0kb upstream 5.0kb upstream 2360 true Scaffold24205: 1-2360 Brassica rapa FPsc
Brara.K00618 5.0kb upstream 5.0kb upstream 1289 false Scaffold24205: 1-1289 Brassica rapa FPsc
Brara.K00618 5.0kb downstream 5.0kb downstream 1417 true Scaffold24205: 1290-2706 Brassica rapa FPsc
Brara.K00618 5.0kb downstream 5.0kb downstream 346 false Scaffold24205: 2361-2706 Brassica rapa FPsc
Brara.K00618 10.0kb upstream 10.0kb upstream 2360 true Scaffold24205: 1-2360 Brassica rapa FPsc
Brara.K00618 10.0kb upstream 10.0kb upstream 1289 false Scaffold24205: 1-1289 Brassica rapa FPsc
Brara.K00618 10.0kb downstream 10.0kb downstream 1417 true Scaffold24205: 1290-2706 Brassica rapa FPsc
Brara.K00618 10.0kb downstream 10.0kb downstream 346 false Scaffold24205: 2361-2706 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373662 5261 Brassicaceae View MSA
123838887 5264 Brassicales-Malvales View MSA
124346490 5266 SBM View MSA
124253905 5268 Malvidae View MSA
124062821 5270 Rosid View MSA
123749878 5271 Pentapetalae View MSA
122793633 5272 Eudicot View MSA
122047271 5273 Angiosperm View MSA
121344259 5274 Embryophyte View MSA
123426805 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier