Gene : Brara.A00196 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR30546:SF3 - MINOR ALLERGEN Genomic Order:  196
Name:  ? Brara.A00196 Secondary Identifier:  ? PAC:30637271
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7279 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A00196 0.5kb upstream 0.5kb upstream 1986 true A01: 1046358-1048343 Brassica rapa FPsc
Brara.A00196 0.5kb upstream 0.5kb upstream 500 false A01: 1047844-1048343 Brassica rapa FPsc
Brara.A00196 0.5kb downstream 0.5kb downstream 1986 true A01: 1045858-1047843 Brassica rapa FPsc
Brara.A00196 0.5kb downstream 0.5kb downstream 500 false A01: 1045858-1046357 Brassica rapa FPsc
Brara.A00196 1.0kb upstream 1.0kb upstream 2486 true A01: 1046358-1048843 Brassica rapa FPsc
Brara.A00196 1.0kb upstream 1.0kb upstream 1000 false A01: 1047844-1048843 Brassica rapa FPsc
Brara.A00196 1.0kb downstream 1.0kb downstream 2486 true A01: 1045358-1047843 Brassica rapa FPsc
Brara.A00196 1.0kb downstream 1.0kb downstream 1000 false A01: 1045358-1046357 Brassica rapa FPsc
Brara.A00196 2.0kb upstream 2.0kb upstream 3486 true A01: 1046358-1049843 Brassica rapa FPsc
Brara.A00196 2.0kb upstream 2.0kb upstream 2000 false A01: 1047844-1049843 Brassica rapa FPsc
Brara.A00196 2.0kb downstream 2.0kb downstream 3486 true A01: 1044358-1047843 Brassica rapa FPsc
Brara.A00196 2.0kb downstream 2.0kb downstream 2000 false A01: 1044358-1046357 Brassica rapa FPsc
Brara.A00196 5.0kb upstream 5.0kb upstream 6486 true A01: 1046358-1052843 Brassica rapa FPsc
Brara.A00196 5.0kb upstream 5.0kb upstream 5000 false A01: 1047844-1052843 Brassica rapa FPsc
Brara.A00196 5.0kb downstream 5.0kb downstream 6486 true A01: 1041358-1047843 Brassica rapa FPsc
Brara.A00196 5.0kb downstream 5.0kb downstream 5000 false A01: 1041358-1046357 Brassica rapa FPsc
Brara.A00196 10.0kb upstream 10.0kb upstream 11486 true A01: 1046358-1057843 Brassica rapa FPsc
Brara.A00196 10.0kb upstream 10.0kb upstream 10000 false A01: 1047844-1057843 Brassica rapa FPsc
Brara.A00196 10.0kb downstream 10.0kb downstream 11486 true A01: 1036358-1047843 Brassica rapa FPsc
Brara.A00196 10.0kb downstream 10.0kb downstream 10000 false A01: 1036358-1046357 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371189 5261 Brassicaceae View MSA
123830075 5264 Brassicales-Malvales View MSA
124345822 5266 SBM View MSA
124254068 5268 Malvidae View MSA
124071872 5270 Rosid View MSA
123747296 5271 Pentapetalae View MSA
122787276 5272 Eudicot View MSA
122042695 5273 Angiosperm View MSA
121346048 5274 Embryophyte View MSA
123428089 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier