Gene : Brara.A00120 B. rapa FPsc v1.3
Defline:  (1 of 12) 1.14.13.132 - Squalene monooxygenase / Squalene epoxidase Genomic Order:  120
Name:  ? Brara.A00120 Secondary Identifier:  ? PAC:30636254
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-2541 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5670 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A00120 0.5kb upstream 0.5kb upstream 3043 true A01: 633889-636931 Brassica rapa FPsc
Brara.A00120 0.5kb upstream 0.5kb upstream 500 false A01: 636432-636931 Brassica rapa FPsc
Brara.A00120 0.5kb downstream 0.5kb downstream 3043 true A01: 633389-636431 Brassica rapa FPsc
Brara.A00120 0.5kb downstream 0.5kb downstream 500 false A01: 633389-633888 Brassica rapa FPsc
Brara.A00120 1.0kb upstream 1.0kb upstream 3543 true A01: 633889-637431 Brassica rapa FPsc
Brara.A00120 1.0kb upstream 1.0kb upstream 1000 false A01: 636432-637431 Brassica rapa FPsc
Brara.A00120 1.0kb downstream 1.0kb downstream 3543 true A01: 632889-636431 Brassica rapa FPsc
Brara.A00120 1.0kb downstream 1.0kb downstream 1000 false A01: 632889-633888 Brassica rapa FPsc
Brara.A00120 2.0kb upstream 2.0kb upstream 4543 true A01: 633889-638431 Brassica rapa FPsc
Brara.A00120 2.0kb upstream 2.0kb upstream 2000 false A01: 636432-638431 Brassica rapa FPsc
Brara.A00120 2.0kb downstream 2.0kb downstream 4543 true A01: 631889-636431 Brassica rapa FPsc
Brara.A00120 2.0kb downstream 2.0kb downstream 2000 false A01: 631889-633888 Brassica rapa FPsc
Brara.A00120 5.0kb upstream 5.0kb upstream 7543 true A01: 633889-641431 Brassica rapa FPsc
Brara.A00120 5.0kb upstream 5.0kb upstream 5000 false A01: 636432-641431 Brassica rapa FPsc
Brara.A00120 5.0kb downstream 5.0kb downstream 7543 true A01: 628889-636431 Brassica rapa FPsc
Brara.A00120 5.0kb downstream 5.0kb downstream 5000 false A01: 628889-633888 Brassica rapa FPsc
Brara.A00120 10.0kb upstream 10.0kb upstream 12543 true A01: 633889-646431 Brassica rapa FPsc
Brara.A00120 10.0kb upstream 10.0kb upstream 10000 false A01: 636432-646431 Brassica rapa FPsc
Brara.A00120 10.0kb downstream 10.0kb downstream 12543 true A01: 623889-636431 Brassica rapa FPsc
Brara.A00120 10.0kb downstream 10.0kb downstream 10000 false A01: 623889-633888 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380334 5261 Brassicaceae View MSA
123838211 5264 Brassicales-Malvales View MSA
124342457 5266 SBM View MSA
124254451 5268 Malvidae View MSA
124072398 5270 Rosid View MSA
123747368 5271 Pentapetalae View MSA
122788930 5272 Eudicot View MSA
122042003 5273 Angiosperm View MSA
121344187 5274 Embryophyte View MSA
123428498 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier