Gene : Brara.A00038 B. rapa FPsc v1.3
Defline:  (1 of 6) PTHR13301:SF27 - CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 2 [UDP-FORMING]-RELATED Genomic Order:  38
Name:  ? Brara.A00038 Secondary Identifier:  ? PAC:30638677
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1001 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A00038 0.5kb upstream 0.5kb upstream 2650 true A01: 212540-215189 Brassica rapa FPsc
Brara.A00038 0.5kb upstream 0.5kb upstream 500 false A01: 212540-213039 Brassica rapa FPsc
Brara.A00038 0.5kb downstream 0.5kb downstream 2650 true A01: 213040-215689 Brassica rapa FPsc
Brara.A00038 0.5kb downstream 0.5kb downstream 500 false A01: 215190-215689 Brassica rapa FPsc
Brara.A00038 1.0kb upstream 1.0kb upstream 3150 true A01: 212040-215189 Brassica rapa FPsc
Brara.A00038 1.0kb upstream 1.0kb upstream 1000 false A01: 212040-213039 Brassica rapa FPsc
Brara.A00038 1.0kb downstream 1.0kb downstream 3150 true A01: 213040-216189 Brassica rapa FPsc
Brara.A00038 1.0kb downstream 1.0kb downstream 1000 false A01: 215190-216189 Brassica rapa FPsc
Brara.A00038 2.0kb upstream 2.0kb upstream 4150 true A01: 211040-215189 Brassica rapa FPsc
Brara.A00038 2.0kb upstream 2.0kb upstream 2000 false A01: 211040-213039 Brassica rapa FPsc
Brara.A00038 2.0kb downstream 2.0kb downstream 4150 true A01: 213040-217189 Brassica rapa FPsc
Brara.A00038 2.0kb downstream 2.0kb downstream 2000 false A01: 215190-217189 Brassica rapa FPsc
Brara.A00038 5.0kb upstream 5.0kb upstream 7150 true A01: 208040-215189 Brassica rapa FPsc
Brara.A00038 5.0kb upstream 5.0kb upstream 5000 false A01: 208040-213039 Brassica rapa FPsc
Brara.A00038 5.0kb downstream 5.0kb downstream 7150 true A01: 213040-220189 Brassica rapa FPsc
Brara.A00038 5.0kb downstream 5.0kb downstream 5000 false A01: 215190-220189 Brassica rapa FPsc
Brara.A00038 10.0kb upstream 10.0kb upstream 12150 true A01: 203040-215189 Brassica rapa FPsc
Brara.A00038 10.0kb upstream 10.0kb upstream 10000 false A01: 203040-213039 Brassica rapa FPsc
Brara.A00038 10.0kb downstream 10.0kb downstream 12150 true A01: 213040-225189 Brassica rapa FPsc
Brara.A00038 10.0kb downstream 10.0kb downstream 10000 false A01: 215190-225189 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122352718 5261 Brassicaceae Singleton cluster - no MSA
123842383 5264 Brassicales-Malvales View MSA
124323449 5266 SBM View MSA
124254069 5268 Malvidae View MSA
124073618 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier