Gene : Brara.A00005 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR13301:SF40 - CELLULOSE SYNTHASE-LIKE PROTEIN D4 Genomic Order:  5
Name:  ? Brara.A00005 Secondary Identifier:  ? PAC:30637801
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5800 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A00005 0.5kb upstream 0.5kb upstream 4179 true A01: 27797-31975 Brassica rapa FPsc
Brara.A00005 0.5kb upstream 0.5kb upstream 500 false A01: 27797-28296 Brassica rapa FPsc
Brara.A00005 0.5kb downstream 0.5kb downstream 4179 true A01: 28297-32475 Brassica rapa FPsc
Brara.A00005 0.5kb downstream 0.5kb downstream 500 false A01: 31976-32475 Brassica rapa FPsc
Brara.A00005 1.0kb upstream 1.0kb upstream 4679 true A01: 27297-31975 Brassica rapa FPsc
Brara.A00005 1.0kb upstream 1.0kb upstream 1000 false A01: 27297-28296 Brassica rapa FPsc
Brara.A00005 1.0kb downstream 1.0kb downstream 4679 true A01: 28297-32975 Brassica rapa FPsc
Brara.A00005 1.0kb downstream 1.0kb downstream 1000 false A01: 31976-32975 Brassica rapa FPsc
Brara.A00005 2.0kb upstream 2.0kb upstream 5679 true A01: 26297-31975 Brassica rapa FPsc
Brara.A00005 2.0kb upstream 2.0kb upstream 2000 false A01: 26297-28296 Brassica rapa FPsc
Brara.A00005 2.0kb downstream 2.0kb downstream 5679 true A01: 28297-33975 Brassica rapa FPsc
Brara.A00005 2.0kb downstream 2.0kb downstream 2000 false A01: 31976-33975 Brassica rapa FPsc
Brara.A00005 5.0kb upstream 5.0kb upstream 8679 true A01: 23297-31975 Brassica rapa FPsc
Brara.A00005 5.0kb upstream 5.0kb upstream 5000 false A01: 23297-28296 Brassica rapa FPsc
Brara.A00005 5.0kb downstream 5.0kb downstream 8679 true A01: 28297-36975 Brassica rapa FPsc
Brara.A00005 5.0kb downstream 5.0kb downstream 5000 false A01: 31976-36975 Brassica rapa FPsc
Brara.A00005 10.0kb upstream 10.0kb upstream 13679 true A01: 18297-31975 Brassica rapa FPsc
Brara.A00005 10.0kb upstream 10.0kb upstream 10000 false A01: 18297-28296 Brassica rapa FPsc
Brara.A00005 10.0kb downstream 10.0kb downstream 13679 true A01: 28297-41975 Brassica rapa FPsc
Brara.A00005 10.0kb downstream 10.0kb downstream 10000 false A01: 31976-41975 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372267 5261 Brassicaceae View MSA
123830026 5264 Brassicales-Malvales View MSA
124343197 5266 SBM View MSA
124251883 5268 Malvidae View MSA
124066542 5270 Rosid View MSA
123736520 5271 Pentapetalae View MSA
122787615 5272 Eudicot View MSA
122046056 5273 Angiosperm View MSA
121310544 5274 Embryophyte View MSA
123348000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier