Gene : Brara.A00557 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR12161:SF14 - REGULATOR OF VPS4 Genomic Order:  557
Name:  ? Brara.A00557 Secondary Identifier:  ? PAC:30637546
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A00557 0.5kb upstream 0.5kb upstream 3490 true A01: 2742994-2746483 Brassica rapa FPsc
Brara.A00557 0.5kb upstream 0.5kb upstream 500 false A01: 2745984-2746483 Brassica rapa FPsc
Brara.A00557 0.5kb downstream 0.5kb downstream 3490 true A01: 2742494-2745983 Brassica rapa FPsc
Brara.A00557 0.5kb downstream 0.5kb downstream 500 false A01: 2742494-2742993 Brassica rapa FPsc
Brara.A00557 1.0kb upstream 1.0kb upstream 3990 true A01: 2742994-2746983 Brassica rapa FPsc
Brara.A00557 1.0kb upstream 1.0kb upstream 1000 false A01: 2745984-2746983 Brassica rapa FPsc
Brara.A00557 1.0kb downstream 1.0kb downstream 3990 true A01: 2741994-2745983 Brassica rapa FPsc
Brara.A00557 1.0kb downstream 1.0kb downstream 1000 false A01: 2741994-2742993 Brassica rapa FPsc
Brara.A00557 2.0kb upstream 2.0kb upstream 4990 true A01: 2742994-2747983 Brassica rapa FPsc
Brara.A00557 2.0kb upstream 2.0kb upstream 2000 false A01: 2745984-2747983 Brassica rapa FPsc
Brara.A00557 2.0kb downstream 2.0kb downstream 4990 true A01: 2740994-2745983 Brassica rapa FPsc
Brara.A00557 2.0kb downstream 2.0kb downstream 2000 false A01: 2740994-2742993 Brassica rapa FPsc
Brara.A00557 5.0kb upstream 5.0kb upstream 7990 true A01: 2742994-2750983 Brassica rapa FPsc
Brara.A00557 5.0kb upstream 5.0kb upstream 5000 false A01: 2745984-2750983 Brassica rapa FPsc
Brara.A00557 5.0kb downstream 5.0kb downstream 7990 true A01: 2737994-2745983 Brassica rapa FPsc
Brara.A00557 5.0kb downstream 5.0kb downstream 5000 false A01: 2737994-2742993 Brassica rapa FPsc
Brara.A00557 10.0kb upstream 10.0kb upstream 12990 true A01: 2742994-2755983 Brassica rapa FPsc
Brara.A00557 10.0kb upstream 10.0kb upstream 10000 false A01: 2745984-2755983 Brassica rapa FPsc
Brara.A00557 10.0kb downstream 10.0kb downstream 12990 true A01: 2732994-2745983 Brassica rapa FPsc
Brara.A00557 10.0kb downstream 10.0kb downstream 10000 false A01: 2732994-2742993 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364977 5261 Brassicaceae View MSA
123835465 5264 Brassicales-Malvales View MSA
124351115 5266 SBM View MSA
124249863 5268 Malvidae View MSA
124066649 5270 Rosid View MSA
123746994 5271 Pentapetalae View MSA
122787378 5272 Eudicot View MSA
122041860 5273 Angiosperm View MSA
121351542 5274 Embryophyte View MSA
123382216 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier