Gene : Bostr.26833s0558 B. stricta v1.2
Defline:  (1 of 1) PTHR13789:SF207 - LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC Genomic Order:  558
Name:  ? Bostr.26833s0558 Secondary Identifier:  ? PAC:30653582
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta CAROTENOID-PWY Boechera stricta pathologic  
Bstricta PWY-5175 Boechera stricta pathologic  
Bstricta PWY-5946 Boechera stricta pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.26833s0558 0.5kb upstream 0.5kb upstream 3501 true Scaffold26833: 2930875-2934375 Boechera stricta
Bostr.26833s0558 0.5kb upstream 0.5kb upstream 500 false Scaffold26833: 2933876-2934375 Boechera stricta
Bostr.26833s0558 0.5kb downstream 0.5kb downstream 3501 true Scaffold26833: 2930375-2933875 Boechera stricta
Bostr.26833s0558 0.5kb downstream 0.5kb downstream 500 false Scaffold26833: 2930375-2930874 Boechera stricta
Bostr.26833s0558 1.0kb upstream 1.0kb upstream 4001 true Scaffold26833: 2930875-2934875 Boechera stricta
Bostr.26833s0558 1.0kb upstream 1.0kb upstream 1000 false Scaffold26833: 2933876-2934875 Boechera stricta
Bostr.26833s0558 1.0kb downstream 1.0kb downstream 4001 true Scaffold26833: 2929875-2933875 Boechera stricta
Bostr.26833s0558 1.0kb downstream 1.0kb downstream 1000 false Scaffold26833: 2929875-2930874 Boechera stricta
Bostr.26833s0558 2.0kb upstream 2.0kb upstream 5001 true Scaffold26833: 2930875-2935875 Boechera stricta
Bostr.26833s0558 2.0kb upstream 2.0kb upstream 2000 false Scaffold26833: 2933876-2935875 Boechera stricta
Bostr.26833s0558 2.0kb downstream 2.0kb downstream 5001 true Scaffold26833: 2928875-2933875 Boechera stricta
Bostr.26833s0558 2.0kb downstream 2.0kb downstream 2000 false Scaffold26833: 2928875-2930874 Boechera stricta
Bostr.26833s0558 5.0kb upstream 5.0kb upstream 8001 true Scaffold26833: 2930875-2938875 Boechera stricta
Bostr.26833s0558 5.0kb upstream 5.0kb upstream 5000 false Scaffold26833: 2933876-2938875 Boechera stricta
Bostr.26833s0558 5.0kb downstream 5.0kb downstream 8001 true Scaffold26833: 2925875-2933875 Boechera stricta
Bostr.26833s0558 5.0kb downstream 5.0kb downstream 5000 false Scaffold26833: 2925875-2930874 Boechera stricta
Bostr.26833s0558 10.0kb upstream 10.0kb upstream 13001 true Scaffold26833: 2930875-2943875 Boechera stricta
Bostr.26833s0558 10.0kb upstream 10.0kb upstream 10000 false Scaffold26833: 2933876-2943875 Boechera stricta
Bostr.26833s0558 10.0kb downstream 10.0kb downstream 13001 true Scaffold26833: 2920875-2933875 Boechera stricta
Bostr.26833s0558 10.0kb downstream 10.0kb downstream 10000 false Scaffold26833: 2920875-2930874 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379674 5261 Brassicaceae View MSA
123834922 5264 Brassicales-Malvales View MSA
124342530 5266 SBM View MSA
124243060 5268 Malvidae View MSA
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain