Gene : Bostr.27991s0109 B. stricta v1.2
Defline:  (1 of 1) PTHR10003:SF34 - SUPEROXIDE DISMUTASE [CU-ZN] 2, CHLOROPLASTIC Genomic Order:  109
Name:  ? Bostr.27991s0109 Secondary Identifier:  ? PAC:30677670
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta DETOX1-PWY Boechera stricta pathologic  
Bstricta DETOX1-PWY-1 Boechera stricta pathologic  
Bstricta PWY-6854 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.27991s0109 0.5kb upstream 0.5kb upstream 2547 true Scaffold27991: 1196222-1198768 Boechera stricta
Bostr.27991s0109 0.5kb upstream 0.5kb upstream 500 false Scaffold27991: 1198269-1198768 Boechera stricta
Bostr.27991s0109 0.5kb downstream 0.5kb downstream 2547 true Scaffold27991: 1195722-1198268 Boechera stricta
Bostr.27991s0109 0.5kb downstream 0.5kb downstream 500 false Scaffold27991: 1195722-1196221 Boechera stricta
Bostr.27991s0109 1.0kb upstream 1.0kb upstream 3047 true Scaffold27991: 1196222-1199268 Boechera stricta
Bostr.27991s0109 1.0kb upstream 1.0kb upstream 1000 false Scaffold27991: 1198269-1199268 Boechera stricta
Bostr.27991s0109 1.0kb downstream 1.0kb downstream 3047 true Scaffold27991: 1195222-1198268 Boechera stricta
Bostr.27991s0109 1.0kb downstream 1.0kb downstream 1000 false Scaffold27991: 1195222-1196221 Boechera stricta
Bostr.27991s0109 2.0kb upstream 2.0kb upstream 4047 true Scaffold27991: 1196222-1200268 Boechera stricta
Bostr.27991s0109 2.0kb upstream 2.0kb upstream 2000 false Scaffold27991: 1198269-1200268 Boechera stricta
Bostr.27991s0109 2.0kb downstream 2.0kb downstream 4047 true Scaffold27991: 1194222-1198268 Boechera stricta
Bostr.27991s0109 2.0kb downstream 2.0kb downstream 2000 false Scaffold27991: 1194222-1196221 Boechera stricta
Bostr.27991s0109 5.0kb upstream 5.0kb upstream 7047 true Scaffold27991: 1196222-1203268 Boechera stricta
Bostr.27991s0109 5.0kb upstream 5.0kb upstream 5000 false Scaffold27991: 1198269-1203268 Boechera stricta
Bostr.27991s0109 5.0kb downstream 5.0kb downstream 7047 true Scaffold27991: 1191222-1198268 Boechera stricta
Bostr.27991s0109 5.0kb downstream 5.0kb downstream 5000 false Scaffold27991: 1191222-1196221 Boechera stricta
Bostr.27991s0109 10.0kb upstream 10.0kb upstream 12047 true Scaffold27991: 1196222-1208268 Boechera stricta
Bostr.27991s0109 10.0kb upstream 10.0kb upstream 10000 false Scaffold27991: 1198269-1208268 Boechera stricta
Bostr.27991s0109 10.0kb downstream 10.0kb downstream 12047 true Scaffold27991: 1186222-1198268 Boechera stricta
Bostr.27991s0109 10.0kb downstream 10.0kb downstream 10000 false Scaffold27991: 1186222-1196221 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375601 5261 Brassicaceae View MSA
123837251 5264 Brassicales-Malvales View MSA
124340795 5266 SBM View MSA
124253159 5268 Malvidae View MSA
124067425 5270 Rosid View MSA
123737273 5271 Pentapetalae View MSA
122788875 5272 Eudicot View MSA
122047736 5273 Angiosperm View MSA
121347419 5274 Embryophyte View MSA
123427939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain