Gene : Bostr.28625s0040 B. stricta v1.2
Defline:  (1 of 2) PTHR11851//PTHR11851:SF145 - METALLOPROTEASE Genomic Order:  40
Name:  ? Bostr.28625s0040 Secondary Identifier:  ? PAC:30679382
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-3781 Boechera stricta pathologic  
Bstricta PWY-7279 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.28625s0040 0.5kb upstream 0.5kb upstream 3765 true Scaffold28625: 285300-289064 Boechera stricta
Bostr.28625s0040 0.5kb upstream 0.5kb upstream 500 false Scaffold28625: 288565-289064 Boechera stricta
Bostr.28625s0040 0.5kb downstream 0.5kb downstream 3765 true Scaffold28625: 284800-288564 Boechera stricta
Bostr.28625s0040 0.5kb downstream 0.5kb downstream 500 false Scaffold28625: 284800-285299 Boechera stricta
Bostr.28625s0040 1.0kb upstream 1.0kb upstream 4265 true Scaffold28625: 285300-289564 Boechera stricta
Bostr.28625s0040 1.0kb upstream 1.0kb upstream 1000 false Scaffold28625: 288565-289564 Boechera stricta
Bostr.28625s0040 1.0kb downstream 1.0kb downstream 4265 true Scaffold28625: 284300-288564 Boechera stricta
Bostr.28625s0040 1.0kb downstream 1.0kb downstream 1000 false Scaffold28625: 284300-285299 Boechera stricta
Bostr.28625s0040 2.0kb upstream 2.0kb upstream 5265 true Scaffold28625: 285300-290564 Boechera stricta
Bostr.28625s0040 2.0kb upstream 2.0kb upstream 2000 false Scaffold28625: 288565-290564 Boechera stricta
Bostr.28625s0040 2.0kb downstream 2.0kb downstream 5265 true Scaffold28625: 283300-288564 Boechera stricta
Bostr.28625s0040 2.0kb downstream 2.0kb downstream 2000 false Scaffold28625: 283300-285299 Boechera stricta
Bostr.28625s0040 5.0kb upstream 5.0kb upstream 8265 true Scaffold28625: 285300-293564 Boechera stricta
Bostr.28625s0040 5.0kb upstream 5.0kb upstream 5000 false Scaffold28625: 288565-293564 Boechera stricta
Bostr.28625s0040 5.0kb downstream 5.0kb downstream 8265 true Scaffold28625: 280300-288564 Boechera stricta
Bostr.28625s0040 5.0kb downstream 5.0kb downstream 5000 false Scaffold28625: 280300-285299 Boechera stricta
Bostr.28625s0040 10.0kb upstream 10.0kb upstream 13265 true Scaffold28625: 285300-298564 Boechera stricta
Bostr.28625s0040 10.0kb upstream 10.0kb upstream 10000 false Scaffold28625: 288565-298564 Boechera stricta
Bostr.28625s0040 10.0kb downstream 10.0kb downstream 13265 true Scaffold28625: 275300-288564 Boechera stricta
Bostr.28625s0040 10.0kb downstream 10.0kb downstream 10000 false Scaffold28625: 275300-285299 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041394 5273 Angiosperm View MSA
122375459 5261 Brassicaceae View MSA
123837486 5264 Brassicales-Malvales View MSA
124346987 5266 SBM View MSA
124244870 5268 Malvidae View MSA
124064083 5270 Rosid View MSA
123738249 5271 Pentapetalae View MSA
122789346 5272 Eudicot View MSA
121350423 5274 Embryophyte View MSA
123425006 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain