Gene : Bostr.29044s0011 B. stricta v1.2
Defline:  (1 of 13) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  11
Name:  ? Bostr.29044s0011 Secondary Identifier:  ? PAC:30651823
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20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.29044s0011 0.5kb upstream 0.5kb upstream 1900 true Scaffold29044: 147719-149618 Boechera stricta
Bostr.29044s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold29044: 147719-148218 Boechera stricta
Bostr.29044s0011 0.5kb downstream 0.5kb downstream 1900 true Scaffold29044: 148219-150118 Boechera stricta
Bostr.29044s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold29044: 149619-150118 Boechera stricta
Bostr.29044s0011 1.0kb upstream 1.0kb upstream 2400 true Scaffold29044: 147219-149618 Boechera stricta
Bostr.29044s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold29044: 147219-148218 Boechera stricta
Bostr.29044s0011 1.0kb downstream 1.0kb downstream 2400 true Scaffold29044: 148219-150618 Boechera stricta
Bostr.29044s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold29044: 149619-150618 Boechera stricta
Bostr.29044s0011 2.0kb upstream 2.0kb upstream 3400 true Scaffold29044: 146219-149618 Boechera stricta
Bostr.29044s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold29044: 146219-148218 Boechera stricta
Bostr.29044s0011 2.0kb downstream 2.0kb downstream 3400 true Scaffold29044: 148219-151618 Boechera stricta
Bostr.29044s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold29044: 149619-151618 Boechera stricta
Bostr.29044s0011 5.0kb upstream 5.0kb upstream 6400 true Scaffold29044: 143219-149618 Boechera stricta
Bostr.29044s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold29044: 143219-148218 Boechera stricta
Bostr.29044s0011 5.0kb downstream 5.0kb downstream 6400 true Scaffold29044: 148219-154618 Boechera stricta
Bostr.29044s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold29044: 149619-154618 Boechera stricta
Bostr.29044s0011 10.0kb upstream 10.0kb upstream 11400 true Scaffold29044: 138219-149618 Boechera stricta
Bostr.29044s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold29044: 138219-148218 Boechera stricta
Bostr.29044s0011 10.0kb downstream 10.0kb downstream 11400 true Scaffold29044: 148219-159618 Boechera stricta
Bostr.29044s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold29044: 149619-159618 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122339100 5261 Brassicaceae Singleton cluster - no MSA
123779609 5264 Brassicales-Malvales Singleton cluster - no MSA
124277927 5266 SBM Singleton cluster - no MSA
124256409 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain