Gene : Bostr.29827s0166 B. stricta v1.2
Defline:  (1 of 2) 6.1.1.17 - Glutamate--tRNA ligase / Glutamyl-tRNA synthetase Genomic Order:  166
Name:  ? Bostr.29827s0166 Secondary Identifier:  ? PAC:30679680
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-5188 Boechera stricta pathologic  
Bstricta PWY-5918 Boechera stricta pathologic  
Bstricta TRNA-CHARGING-PWY Boechera stricta pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.29827s0166 0.5kb upstream 0.5kb upstream 3359 true Scaffold29827: 1676925-1680283 Boechera stricta
Bostr.29827s0166 0.5kb upstream 0.5kb upstream 500 false Scaffold29827: 1679784-1680283 Boechera stricta
Bostr.29827s0166 0.5kb downstream 0.5kb downstream 3359 true Scaffold29827: 1676425-1679783 Boechera stricta
Bostr.29827s0166 0.5kb downstream 0.5kb downstream 500 false Scaffold29827: 1676425-1676924 Boechera stricta
Bostr.29827s0166 1.0kb upstream 1.0kb upstream 3859 true Scaffold29827: 1676925-1680783 Boechera stricta
Bostr.29827s0166 1.0kb upstream 1.0kb upstream 1000 false Scaffold29827: 1679784-1680783 Boechera stricta
Bostr.29827s0166 1.0kb downstream 1.0kb downstream 3859 true Scaffold29827: 1675925-1679783 Boechera stricta
Bostr.29827s0166 1.0kb downstream 1.0kb downstream 1000 false Scaffold29827: 1675925-1676924 Boechera stricta
Bostr.29827s0166 2.0kb upstream 2.0kb upstream 4859 true Scaffold29827: 1676925-1681783 Boechera stricta
Bostr.29827s0166 2.0kb upstream 2.0kb upstream 2000 false Scaffold29827: 1679784-1681783 Boechera stricta
Bostr.29827s0166 2.0kb downstream 2.0kb downstream 4859 true Scaffold29827: 1674925-1679783 Boechera stricta
Bostr.29827s0166 2.0kb downstream 2.0kb downstream 2000 false Scaffold29827: 1674925-1676924 Boechera stricta
Bostr.29827s0166 5.0kb upstream 5.0kb upstream 7859 true Scaffold29827: 1676925-1684783 Boechera stricta
Bostr.29827s0166 5.0kb upstream 5.0kb upstream 5000 false Scaffold29827: 1679784-1684783 Boechera stricta
Bostr.29827s0166 5.0kb downstream 5.0kb downstream 7859 true Scaffold29827: 1671925-1679783 Boechera stricta
Bostr.29827s0166 5.0kb downstream 5.0kb downstream 5000 false Scaffold29827: 1671925-1676924 Boechera stricta
Bostr.29827s0166 10.0kb upstream 10.0kb upstream 12859 true Scaffold29827: 1676925-1689783 Boechera stricta
Bostr.29827s0166 10.0kb upstream 10.0kb upstream 10000 false Scaffold29827: 1679784-1689783 Boechera stricta
Bostr.29827s0166 10.0kb downstream 10.0kb downstream 12859 true Scaffold29827: 1666925-1679783 Boechera stricta
Bostr.29827s0166 10.0kb downstream 10.0kb downstream 10000 false Scaffold29827: 1666925-1676924 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381575 5261 Brassicaceae View MSA
123835075 5264 Brassicales-Malvales View MSA
124339524 5266 SBM View MSA
124249324 5268 Malvidae View MSA
124065023 5270 Rosid View MSA
123740640 5271 Pentapetalae View MSA
122787926 5272 Eudicot View MSA
122046625 5273 Angiosperm View MSA
121349445 5274 Embryophyte View MSA
123426828 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain