Gene : Bostr.30275s0291 B. stricta v1.2
Defline:  (1 of 1) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED Genomic Order:  291
Name:  ? Bostr.30275s0291 Secondary Identifier:  ? PAC:30665316
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta GLYCOGENSYNTH-PWY Boechera stricta pathologic  
Bstricta PWY-622 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.30275s0291 0.5kb upstream 0.5kb upstream 5690 true Scaffold30275: 1824341-1830030 Boechera stricta
Bostr.30275s0291 0.5kb upstream 0.5kb upstream 500 false Scaffold30275: 1824341-1824840 Boechera stricta
Bostr.30275s0291 0.5kb downstream 0.5kb downstream 5690 true Scaffold30275: 1824841-1830530 Boechera stricta
Bostr.30275s0291 0.5kb downstream 0.5kb downstream 500 false Scaffold30275: 1830031-1830530 Boechera stricta
Bostr.30275s0291 1.0kb upstream 1.0kb upstream 6190 true Scaffold30275: 1823841-1830030 Boechera stricta
Bostr.30275s0291 1.0kb upstream 1.0kb upstream 1000 false Scaffold30275: 1823841-1824840 Boechera stricta
Bostr.30275s0291 1.0kb downstream 1.0kb downstream 6190 true Scaffold30275: 1824841-1831030 Boechera stricta
Bostr.30275s0291 1.0kb downstream 1.0kb downstream 1000 false Scaffold30275: 1830031-1831030 Boechera stricta
Bostr.30275s0291 2.0kb upstream 2.0kb upstream 7190 true Scaffold30275: 1822841-1830030 Boechera stricta
Bostr.30275s0291 2.0kb upstream 2.0kb upstream 2000 false Scaffold30275: 1822841-1824840 Boechera stricta
Bostr.30275s0291 2.0kb downstream 2.0kb downstream 7190 true Scaffold30275: 1824841-1832030 Boechera stricta
Bostr.30275s0291 2.0kb downstream 2.0kb downstream 2000 false Scaffold30275: 1830031-1832030 Boechera stricta
Bostr.30275s0291 5.0kb upstream 5.0kb upstream 10190 true Scaffold30275: 1819841-1830030 Boechera stricta
Bostr.30275s0291 5.0kb upstream 5.0kb upstream 5000 false Scaffold30275: 1819841-1824840 Boechera stricta
Bostr.30275s0291 5.0kb downstream 5.0kb downstream 10190 true Scaffold30275: 1824841-1835030 Boechera stricta
Bostr.30275s0291 5.0kb downstream 5.0kb downstream 5000 false Scaffold30275: 1830031-1835030 Boechera stricta
Bostr.30275s0291 10.0kb upstream 10.0kb upstream 15190 true Scaffold30275: 1814841-1830030 Boechera stricta
Bostr.30275s0291 10.0kb upstream 10.0kb upstream 10000 false Scaffold30275: 1814841-1824840 Boechera stricta
Bostr.30275s0291 10.0kb downstream 10.0kb downstream 15190 true Scaffold30275: 1824841-1840030 Boechera stricta
Bostr.30275s0291 10.0kb downstream 10.0kb downstream 10000 false Scaffold30275: 1830031-1840030 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360271 5261 Brassicaceae View MSA
123829886 5264 Brassicales-Malvales View MSA
124343403 5266 SBM View MSA
124243663 5268 Malvidae View MSA
124062542 5270 Rosid View MSA
123737586 5271 Pentapetalae View MSA
122786746 5272 Eudicot View MSA
122042885 5273 Angiosperm View MSA
121344527 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain