Gene : Bostr.0556s0248 B. stricta v1.2
Defline:  (1 of 4) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  248
Name:  ? Bostr.0556s0248 Secondary Identifier:  ? PAC:30664218
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-735 Boechera stricta pathologic  

Genomics

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Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.0556s0248 0.5kb upstream 0.5kb upstream 1863 true Scaffold556: 1484327-1486189 Boechera stricta
Bostr.0556s0248 0.5kb upstream 0.5kb upstream 500 false Scaffold556: 1484327-1484826 Boechera stricta
Bostr.0556s0248 0.5kb downstream 0.5kb downstream 1863 true Scaffold556: 1484827-1486689 Boechera stricta
Bostr.0556s0248 0.5kb downstream 0.5kb downstream 500 false Scaffold556: 1486190-1486689 Boechera stricta
Bostr.0556s0248 1.0kb upstream 1.0kb upstream 2363 true Scaffold556: 1483827-1486189 Boechera stricta
Bostr.0556s0248 1.0kb upstream 1.0kb upstream 1000 false Scaffold556: 1483827-1484826 Boechera stricta
Bostr.0556s0248 1.0kb downstream 1.0kb downstream 2363 true Scaffold556: 1484827-1487189 Boechera stricta
Bostr.0556s0248 1.0kb downstream 1.0kb downstream 1000 false Scaffold556: 1486190-1487189 Boechera stricta
Bostr.0556s0248 2.0kb upstream 2.0kb upstream 3363 true Scaffold556: 1482827-1486189 Boechera stricta
Bostr.0556s0248 2.0kb upstream 2.0kb upstream 2000 false Scaffold556: 1482827-1484826 Boechera stricta
Bostr.0556s0248 2.0kb downstream 2.0kb downstream 3363 true Scaffold556: 1484827-1488189 Boechera stricta
Bostr.0556s0248 2.0kb downstream 2.0kb downstream 2000 false Scaffold556: 1486190-1488189 Boechera stricta
Bostr.0556s0248 5.0kb upstream 5.0kb upstream 6363 true Scaffold556: 1479827-1486189 Boechera stricta
Bostr.0556s0248 5.0kb upstream 5.0kb upstream 5000 false Scaffold556: 1479827-1484826 Boechera stricta
Bostr.0556s0248 5.0kb downstream 5.0kb downstream 6363 true Scaffold556: 1484827-1491189 Boechera stricta
Bostr.0556s0248 5.0kb downstream 5.0kb downstream 5000 false Scaffold556: 1486190-1491189 Boechera stricta
Bostr.0556s0248 10.0kb upstream 10.0kb upstream 11363 true Scaffold556: 1474827-1486189 Boechera stricta
Bostr.0556s0248 10.0kb upstream 10.0kb upstream 10000 false Scaffold556: 1474827-1484826 Boechera stricta
Bostr.0556s0248 10.0kb downstream 10.0kb downstream 11363 true Scaffold556: 1484827-1496189 Boechera stricta
Bostr.0556s0248 10.0kb downstream 10.0kb downstream 10000 false Scaffold556: 1486190-1496189 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380510 5261 Brassicaceae View MSA
123828498 5264 Brassicales-Malvales View MSA
124339249 5266 SBM View MSA
124252758 5268 Malvidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain