Gene : Bostr.0556s0778 B. stricta v1.2
Defline:  (1 of 1) PTHR21266:SF24 - PHEOPHORBIDE A OXYGENASE, CHLOROPLASTIC Genomic Order:  778
Name:  ? Bostr.0556s0778 Secondary Identifier:  ? PAC:30663776
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-5098 Boechera stricta pathologic  
Bstricta PWY-6927 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.0556s0778 0.5kb upstream 0.5kb upstream 3172 true Scaffold556: 4930394-4933565 Boechera stricta
Bostr.0556s0778 0.5kb upstream 0.5kb upstream 500 false Scaffold556: 4930394-4930893 Boechera stricta
Bostr.0556s0778 0.5kb downstream 0.5kb downstream 3172 true Scaffold556: 4930894-4934065 Boechera stricta
Bostr.0556s0778 0.5kb downstream 0.5kb downstream 500 false Scaffold556: 4933566-4934065 Boechera stricta
Bostr.0556s0778 1.0kb upstream 1.0kb upstream 3672 true Scaffold556: 4929894-4933565 Boechera stricta
Bostr.0556s0778 1.0kb upstream 1.0kb upstream 1000 false Scaffold556: 4929894-4930893 Boechera stricta
Bostr.0556s0778 1.0kb downstream 1.0kb downstream 3672 true Scaffold556: 4930894-4934565 Boechera stricta
Bostr.0556s0778 1.0kb downstream 1.0kb downstream 1000 false Scaffold556: 4933566-4934565 Boechera stricta
Bostr.0556s0778 2.0kb upstream 2.0kb upstream 4672 true Scaffold556: 4928894-4933565 Boechera stricta
Bostr.0556s0778 2.0kb upstream 2.0kb upstream 2000 false Scaffold556: 4928894-4930893 Boechera stricta
Bostr.0556s0778 2.0kb downstream 2.0kb downstream 4672 true Scaffold556: 4930894-4935565 Boechera stricta
Bostr.0556s0778 2.0kb downstream 2.0kb downstream 2000 false Scaffold556: 4933566-4935565 Boechera stricta
Bostr.0556s0778 5.0kb upstream 5.0kb upstream 7672 true Scaffold556: 4925894-4933565 Boechera stricta
Bostr.0556s0778 5.0kb upstream 5.0kb upstream 5000 false Scaffold556: 4925894-4930893 Boechera stricta
Bostr.0556s0778 5.0kb downstream 5.0kb downstream 7672 true Scaffold556: 4930894-4938565 Boechera stricta
Bostr.0556s0778 5.0kb downstream 5.0kb downstream 5000 false Scaffold556: 4933566-4938565 Boechera stricta
Bostr.0556s0778 10.0kb upstream 10.0kb upstream 12672 true Scaffold556: 4920894-4933565 Boechera stricta
Bostr.0556s0778 10.0kb upstream 10.0kb upstream 10000 false Scaffold556: 4920894-4930893 Boechera stricta
Bostr.0556s0778 10.0kb downstream 10.0kb downstream 12672 true Scaffold556: 4930894-4943565 Boechera stricta
Bostr.0556s0778 10.0kb downstream 10.0kb downstream 10000 false Scaffold556: 4933566-4943565 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367692 5261 Brassicaceae View MSA
123834068 5264 Brassicales-Malvales View MSA
124342673 5266 SBM View MSA
124241153 5268 Malvidae View MSA
124063848 5270 Rosid View MSA
123748606 5271 Pentapetalae View MSA
122790785 5272 Eudicot View MSA
122042360 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121346632 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain