Gene : Bostr.0556s0621 B. stricta v1.2
Defline:  (1 of 1) PTHR33149:SF4 - PHOTOSYSTEM Q(B) PROTEIN Genomic Order:  621
Name:  ? Bostr.0556s0621 Secondary Identifier:  ? PAC:30663567
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PHOTOALL-PWY Boechera stricta pathologic  
Bstricta PWY-101 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.0556s0621 0.5kb upstream 0.5kb upstream 734 true Scaffold556: 3905816-3906549 Boechera stricta
Bostr.0556s0621 0.5kb upstream 0.5kb upstream 500 false Scaffold556: 3905816-3906315 Boechera stricta
Bostr.0556s0621 0.5kb downstream 0.5kb downstream 734 true Scaffold556: 3906316-3907049 Boechera stricta
Bostr.0556s0621 0.5kb downstream 0.5kb downstream 500 false Scaffold556: 3906550-3907049 Boechera stricta
Bostr.0556s0621 1.0kb upstream 1.0kb upstream 1234 true Scaffold556: 3905316-3906549 Boechera stricta
Bostr.0556s0621 1.0kb upstream 1.0kb upstream 1000 false Scaffold556: 3905316-3906315 Boechera stricta
Bostr.0556s0621 1.0kb downstream 1.0kb downstream 1234 true Scaffold556: 3906316-3907549 Boechera stricta
Bostr.0556s0621 1.0kb downstream 1.0kb downstream 1000 false Scaffold556: 3906550-3907549 Boechera stricta
Bostr.0556s0621 2.0kb upstream 2.0kb upstream 2234 true Scaffold556: 3904316-3906549 Boechera stricta
Bostr.0556s0621 2.0kb upstream 2.0kb upstream 2000 false Scaffold556: 3904316-3906315 Boechera stricta
Bostr.0556s0621 2.0kb downstream 2.0kb downstream 2234 true Scaffold556: 3906316-3908549 Boechera stricta
Bostr.0556s0621 2.0kb downstream 2.0kb downstream 2000 false Scaffold556: 3906550-3908549 Boechera stricta
Bostr.0556s0621 5.0kb upstream 5.0kb upstream 5234 true Scaffold556: 3901316-3906549 Boechera stricta
Bostr.0556s0621 5.0kb upstream 5.0kb upstream 5000 false Scaffold556: 3901316-3906315 Boechera stricta
Bostr.0556s0621 5.0kb downstream 5.0kb downstream 5234 true Scaffold556: 3906316-3911549 Boechera stricta
Bostr.0556s0621 5.0kb downstream 5.0kb downstream 5000 false Scaffold556: 3906550-3911549 Boechera stricta
Bostr.0556s0621 10.0kb upstream 10.0kb upstream 10234 true Scaffold556: 3896316-3906549 Boechera stricta
Bostr.0556s0621 10.0kb upstream 10.0kb upstream 10000 false Scaffold556: 3896316-3906315 Boechera stricta
Bostr.0556s0621 10.0kb downstream 10.0kb downstream 10234 true Scaffold556: 3906316-3916549 Boechera stricta
Bostr.0556s0621 10.0kb downstream 10.0kb downstream 10000 false Scaffold556: 3906550-3916549 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122340571 5261 Brassicaceae Singleton cluster - no MSA
123841385 5264 Brassicales-Malvales View MSA
124322915 5266 SBM View MSA
124169258 5268 Malvidae View MSA
123892324 5270 Rosid View MSA
123750687 5271 Pentapetalae View MSA
122795300 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain