Gene : Bostr.0568s0480 B. stricta v1.2
Defline:  (1 of 13) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  480
Name:  ? Bostr.0568s0480 Secondary Identifier:  ? PAC:30669458
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.0568s0480 0.5kb upstream 0.5kb upstream 1309 true Scaffold568: 2231058-2232366 Boechera stricta
Bostr.0568s0480 0.5kb upstream 0.5kb upstream 500 false Scaffold568: 2231058-2231557 Boechera stricta
Bostr.0568s0480 0.5kb downstream 0.5kb downstream 1309 true Scaffold568: 2231558-2232866 Boechera stricta
Bostr.0568s0480 0.5kb downstream 0.5kb downstream 500 false Scaffold568: 2232367-2232866 Boechera stricta
Bostr.0568s0480 1.0kb upstream 1.0kb upstream 1809 true Scaffold568: 2230558-2232366 Boechera stricta
Bostr.0568s0480 1.0kb upstream 1.0kb upstream 1000 false Scaffold568: 2230558-2231557 Boechera stricta
Bostr.0568s0480 1.0kb downstream 1.0kb downstream 1809 true Scaffold568: 2231558-2233366 Boechera stricta
Bostr.0568s0480 1.0kb downstream 1.0kb downstream 1000 false Scaffold568: 2232367-2233366 Boechera stricta
Bostr.0568s0480 2.0kb upstream 2.0kb upstream 2809 true Scaffold568: 2229558-2232366 Boechera stricta
Bostr.0568s0480 2.0kb upstream 2.0kb upstream 2000 false Scaffold568: 2229558-2231557 Boechera stricta
Bostr.0568s0480 2.0kb downstream 2.0kb downstream 2809 true Scaffold568: 2231558-2234366 Boechera stricta
Bostr.0568s0480 2.0kb downstream 2.0kb downstream 2000 false Scaffold568: 2232367-2234366 Boechera stricta
Bostr.0568s0480 5.0kb upstream 5.0kb upstream 5809 true Scaffold568: 2226558-2232366 Boechera stricta
Bostr.0568s0480 5.0kb upstream 5.0kb upstream 5000 false Scaffold568: 2226558-2231557 Boechera stricta
Bostr.0568s0480 5.0kb downstream 5.0kb downstream 5809 true Scaffold568: 2231558-2237366 Boechera stricta
Bostr.0568s0480 5.0kb downstream 5.0kb downstream 5000 false Scaffold568: 2232367-2237366 Boechera stricta
Bostr.0568s0480 10.0kb upstream 10.0kb upstream 10809 true Scaffold568: 2221558-2232366 Boechera stricta
Bostr.0568s0480 10.0kb upstream 10.0kb upstream 10000 false Scaffold568: 2221558-2231557 Boechera stricta
Bostr.0568s0480 10.0kb downstream 10.0kb downstream 10809 true Scaffold568: 2231558-2242366 Boechera stricta
Bostr.0568s0480 10.0kb downstream 10.0kb downstream 10000 false Scaffold568: 2232367-2242366 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370428 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain