Gene : Bostr.0568s0400 B. stricta v1.2
Defline:  (1 of 1) PTHR36814:SF1 - PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC Genomic Order:  400
Name:  ? Bostr.0568s0400 Secondary Identifier:  ? PAC:30669283
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PHOTOALL-PWY Boechera stricta pathologic  
Bstricta PWY-101 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.0568s0400 0.5kb upstream 0.5kb upstream 1328 true Scaffold568: 1858432-1859759 Boechera stricta
Bostr.0568s0400 0.5kb upstream 0.5kb upstream 500 false Scaffold568: 1858432-1858931 Boechera stricta
Bostr.0568s0400 0.5kb downstream 0.5kb downstream 1328 true Scaffold568: 1858932-1860259 Boechera stricta
Bostr.0568s0400 0.5kb downstream 0.5kb downstream 500 false Scaffold568: 1859760-1860259 Boechera stricta
Bostr.0568s0400 1.0kb upstream 1.0kb upstream 1828 true Scaffold568: 1857932-1859759 Boechera stricta
Bostr.0568s0400 1.0kb upstream 1.0kb upstream 1000 false Scaffold568: 1857932-1858931 Boechera stricta
Bostr.0568s0400 1.0kb downstream 1.0kb downstream 1828 true Scaffold568: 1858932-1860759 Boechera stricta
Bostr.0568s0400 1.0kb downstream 1.0kb downstream 1000 false Scaffold568: 1859760-1860759 Boechera stricta
Bostr.0568s0400 2.0kb upstream 2.0kb upstream 2828 true Scaffold568: 1856932-1859759 Boechera stricta
Bostr.0568s0400 2.0kb upstream 2.0kb upstream 2000 false Scaffold568: 1856932-1858931 Boechera stricta
Bostr.0568s0400 2.0kb downstream 2.0kb downstream 2828 true Scaffold568: 1858932-1861759 Boechera stricta
Bostr.0568s0400 2.0kb downstream 2.0kb downstream 2000 false Scaffold568: 1859760-1861759 Boechera stricta
Bostr.0568s0400 5.0kb upstream 5.0kb upstream 5828 true Scaffold568: 1853932-1859759 Boechera stricta
Bostr.0568s0400 5.0kb upstream 5.0kb upstream 5000 false Scaffold568: 1853932-1858931 Boechera stricta
Bostr.0568s0400 5.0kb downstream 5.0kb downstream 5828 true Scaffold568: 1858932-1864759 Boechera stricta
Bostr.0568s0400 5.0kb downstream 5.0kb downstream 5000 false Scaffold568: 1859760-1864759 Boechera stricta
Bostr.0568s0400 10.0kb upstream 10.0kb upstream 10828 true Scaffold568: 1848932-1859759 Boechera stricta
Bostr.0568s0400 10.0kb upstream 10.0kb upstream 10000 false Scaffold568: 1848932-1858931 Boechera stricta
Bostr.0568s0400 10.0kb downstream 10.0kb downstream 10828 true Scaffold568: 1858932-1869759 Boechera stricta
Bostr.0568s0400 10.0kb downstream 10.0kb downstream 10000 false Scaffold568: 1859760-1869759 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379463 5261 Brassicaceae View MSA
123830230 5264 Brassicales-Malvales View MSA
124345790 5266 SBM View MSA
124247840 5268 Malvidae View MSA
124061914 5270 Rosid View MSA
123739503 5271 Pentapetalae View MSA
122786700 5272 Eudicot View MSA
122046387 5273 Angiosperm View MSA
121346900 5274 Embryophyte View MSA
123425334 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain