Gene : Bostr.2570s0025 B. stricta v1.2
Defline:  (1 of 1) 1.1.1.25 - Shikimate dehydrogenase / Shikimate:NADP(+) oxidoreductase Genomic Order:  25
Name:  ? Bostr.2570s0025 Secondary Identifier:  ? PAC:30666687
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta ARO-PWY Boechera stricta pathologic  
Bstricta PWY-6163 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.2570s0025 0.5kb upstream 0.5kb upstream 3900 true Scaffold2570: 130083-133982 Boechera stricta
Bostr.2570s0025 0.5kb upstream 0.5kb upstream 500 false Scaffold2570: 130083-130582 Boechera stricta
Bostr.2570s0025 0.5kb downstream 0.5kb downstream 3900 true Scaffold2570: 130583-134482 Boechera stricta
Bostr.2570s0025 0.5kb downstream 0.5kb downstream 500 false Scaffold2570: 133983-134482 Boechera stricta
Bostr.2570s0025 1.0kb upstream 1.0kb upstream 4400 true Scaffold2570: 129583-133982 Boechera stricta
Bostr.2570s0025 1.0kb upstream 1.0kb upstream 1000 false Scaffold2570: 129583-130582 Boechera stricta
Bostr.2570s0025 1.0kb downstream 1.0kb downstream 4400 true Scaffold2570: 130583-134982 Boechera stricta
Bostr.2570s0025 1.0kb downstream 1.0kb downstream 1000 false Scaffold2570: 133983-134982 Boechera stricta
Bostr.2570s0025 2.0kb upstream 2.0kb upstream 5400 true Scaffold2570: 128583-133982 Boechera stricta
Bostr.2570s0025 2.0kb upstream 2.0kb upstream 2000 false Scaffold2570: 128583-130582 Boechera stricta
Bostr.2570s0025 2.0kb downstream 2.0kb downstream 5400 true Scaffold2570: 130583-135982 Boechera stricta
Bostr.2570s0025 2.0kb downstream 2.0kb downstream 2000 false Scaffold2570: 133983-135982 Boechera stricta
Bostr.2570s0025 5.0kb upstream 5.0kb upstream 8400 true Scaffold2570: 125583-133982 Boechera stricta
Bostr.2570s0025 5.0kb upstream 5.0kb upstream 5000 false Scaffold2570: 125583-130582 Boechera stricta
Bostr.2570s0025 5.0kb downstream 5.0kb downstream 8400 true Scaffold2570: 130583-138982 Boechera stricta
Bostr.2570s0025 5.0kb downstream 5.0kb downstream 5000 false Scaffold2570: 133983-138982 Boechera stricta
Bostr.2570s0025 10.0kb upstream 10.0kb upstream 13400 true Scaffold2570: 120583-133982 Boechera stricta
Bostr.2570s0025 10.0kb upstream 10.0kb upstream 10000 false Scaffold2570: 120583-130582 Boechera stricta
Bostr.2570s0025 10.0kb downstream 10.0kb downstream 13400 true Scaffold2570: 130583-143982 Boechera stricta
Bostr.2570s0025 10.0kb downstream 10.0kb downstream 10000 false Scaffold2570: 133983-143982 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372861 5261 Brassicaceae View MSA
123830471 5264 Brassicales-Malvales View MSA
124341830 5266 SBM View MSA
124242776 5268 Malvidae View MSA
124068153 5270 Rosid View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain