Gene : Bostr.7305s0002 B. stricta v1.2
Defline:  (1 of 1) PTHR20836:SF2 - 4-HYDROXY-TETRAHYDRODIPICOLINATE REDUCTASE 3, CHLOROPLASTIC-RELATED Genomic Order:  2
Name:  ? Bostr.7305s0002 Secondary Identifier:  ? PAC:30678035
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-5097 Boechera stricta pathologic  
Bstricta PWY-724 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.7305s0002 0.5kb upstream 0.5kb upstream 2455 true Scaffold7305: 5180-7634 Boechera stricta
Bostr.7305s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold7305: 5180-5679 Boechera stricta
Bostr.7305s0002 0.5kb downstream 0.5kb downstream 2455 true Scaffold7305: 5680-8134 Boechera stricta
Bostr.7305s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold7305: 7635-8134 Boechera stricta
Bostr.7305s0002 1.0kb upstream 1.0kb upstream 2955 true Scaffold7305: 4680-7634 Boechera stricta
Bostr.7305s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold7305: 4680-5679 Boechera stricta
Bostr.7305s0002 1.0kb downstream 1.0kb downstream 2955 true Scaffold7305: 5680-8634 Boechera stricta
Bostr.7305s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold7305: 7635-8634 Boechera stricta
Bostr.7305s0002 2.0kb upstream 2.0kb upstream 3955 true Scaffold7305: 3680-7634 Boechera stricta
Bostr.7305s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold7305: 3680-5679 Boechera stricta
Bostr.7305s0002 2.0kb downstream 2.0kb downstream 3955 true Scaffold7305: 5680-9634 Boechera stricta
Bostr.7305s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold7305: 7635-9634 Boechera stricta
Bostr.7305s0002 5.0kb upstream 5.0kb upstream 6955 true Scaffold7305: 680-7634 Boechera stricta
Bostr.7305s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold7305: 680-5679 Boechera stricta
Bostr.7305s0002 5.0kb downstream 5.0kb downstream 6955 true Scaffold7305: 5680-12634 Boechera stricta
Bostr.7305s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold7305: 7635-12634 Boechera stricta
Bostr.7305s0002 10.0kb upstream 10.0kb upstream 7634 true Scaffold7305: 1-7634 Boechera stricta
Bostr.7305s0002 10.0kb upstream 10.0kb upstream 5679 false Scaffold7305: 1-5679 Boechera stricta
Bostr.7305s0002 10.0kb downstream 10.0kb downstream 11955 true Scaffold7305: 5680-17634 Boechera stricta
Bostr.7305s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold7305: 7635-17634 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369793 5261 Brassicaceae View MSA
123835004 5264 Brassicales-Malvales View MSA
124342546 5266 SBM View MSA
124237617 5268 Malvidae View MSA
124065069 5270 Rosid View MSA
123739710 5271 Pentapetalae View MSA
122786759 5272 Eudicot View MSA
122042958 5273 Angiosperm View MSA
121344567 5274 Embryophyte View MSA
123380066 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain