Gene : Bostr.7128s0352 B. stricta v1.2
Defline:  (1 of 2) PTHR11771:SF38 - LIPOXYGENASE 3, CHLOROPLASTIC-RELATED Genomic Order:  352
Name:  ? Bostr.7128s0352 Secondary Identifier:  ? PAC:30660757
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-5409 Boechera stricta pathologic  
Bstricta PWY-5410 Boechera stricta pathologic  
Bstricta PWY-735 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.7128s0352 0.5kb upstream 0.5kb upstream 4633 true Scaffold7128: 1569315-1573947 Boechera stricta
Bostr.7128s0352 0.5kb upstream 0.5kb upstream 500 false Scaffold7128: 1569315-1569814 Boechera stricta
Bostr.7128s0352 0.5kb downstream 0.5kb downstream 4633 true Scaffold7128: 1569815-1574447 Boechera stricta
Bostr.7128s0352 0.5kb downstream 0.5kb downstream 500 false Scaffold7128: 1573948-1574447 Boechera stricta
Bostr.7128s0352 1.0kb upstream 1.0kb upstream 5133 true Scaffold7128: 1568815-1573947 Boechera stricta
Bostr.7128s0352 1.0kb upstream 1.0kb upstream 1000 false Scaffold7128: 1568815-1569814 Boechera stricta
Bostr.7128s0352 1.0kb downstream 1.0kb downstream 5133 true Scaffold7128: 1569815-1574947 Boechera stricta
Bostr.7128s0352 1.0kb downstream 1.0kb downstream 1000 false Scaffold7128: 1573948-1574947 Boechera stricta
Bostr.7128s0352 2.0kb upstream 2.0kb upstream 6133 true Scaffold7128: 1567815-1573947 Boechera stricta
Bostr.7128s0352 2.0kb upstream 2.0kb upstream 2000 false Scaffold7128: 1567815-1569814 Boechera stricta
Bostr.7128s0352 2.0kb downstream 2.0kb downstream 6133 true Scaffold7128: 1569815-1575947 Boechera stricta
Bostr.7128s0352 2.0kb downstream 2.0kb downstream 2000 false Scaffold7128: 1573948-1575947 Boechera stricta
Bostr.7128s0352 5.0kb upstream 5.0kb upstream 9133 true Scaffold7128: 1564815-1573947 Boechera stricta
Bostr.7128s0352 5.0kb upstream 5.0kb upstream 5000 false Scaffold7128: 1564815-1569814 Boechera stricta
Bostr.7128s0352 5.0kb downstream 5.0kb downstream 9133 true Scaffold7128: 1569815-1578947 Boechera stricta
Bostr.7128s0352 5.0kb downstream 5.0kb downstream 5000 false Scaffold7128: 1573948-1578947 Boechera stricta
Bostr.7128s0352 10.0kb upstream 10.0kb upstream 14133 true Scaffold7128: 1559815-1573947 Boechera stricta
Bostr.7128s0352 10.0kb upstream 10.0kb upstream 10000 false Scaffold7128: 1559815-1569814 Boechera stricta
Bostr.7128s0352 10.0kb downstream 10.0kb downstream 14133 true Scaffold7128: 1569815-1583947 Boechera stricta
Bostr.7128s0352 10.0kb downstream 10.0kb downstream 10000 false Scaffold7128: 1573948-1583947 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372278 5261 Brassicaceae View MSA
123836970 5264 Brassicales-Malvales View MSA
124344958 5266 SBM View MSA
124254155 5268 Malvidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain