Gene : Bostr.10040s0348 B. stricta v1.2
Defline:  (1 of 2) PTHR13812//PTHR13812:SF20 - ORNITHINE CYCLODEAMINASE-RELATED Genomic Order:  348
Name:  ? Bostr.10040s0348 Secondary Identifier:  ? PAC:30670155
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-5188 Boechera stricta pathologic  
Bstricta PWY-5918 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.10040s0348 0.5kb upstream 0.5kb upstream 2947 true Scaffold10040: 3359653-3362599 Boechera stricta
Bostr.10040s0348 0.5kb upstream 0.5kb upstream 500 false Scaffold10040: 3359653-3360152 Boechera stricta
Bostr.10040s0348 0.5kb downstream 0.5kb downstream 2947 true Scaffold10040: 3360153-3363099 Boechera stricta
Bostr.10040s0348 0.5kb downstream 0.5kb downstream 500 false Scaffold10040: 3362600-3363099 Boechera stricta
Bostr.10040s0348 1.0kb upstream 1.0kb upstream 3447 true Scaffold10040: 3359153-3362599 Boechera stricta
Bostr.10040s0348 1.0kb upstream 1.0kb upstream 1000 false Scaffold10040: 3359153-3360152 Boechera stricta
Bostr.10040s0348 1.0kb downstream 1.0kb downstream 3447 true Scaffold10040: 3360153-3363599 Boechera stricta
Bostr.10040s0348 1.0kb downstream 1.0kb downstream 1000 false Scaffold10040: 3362600-3363599 Boechera stricta
Bostr.10040s0348 2.0kb upstream 2.0kb upstream 4447 true Scaffold10040: 3358153-3362599 Boechera stricta
Bostr.10040s0348 2.0kb upstream 2.0kb upstream 2000 false Scaffold10040: 3358153-3360152 Boechera stricta
Bostr.10040s0348 2.0kb downstream 2.0kb downstream 4447 true Scaffold10040: 3360153-3364599 Boechera stricta
Bostr.10040s0348 2.0kb downstream 2.0kb downstream 2000 false Scaffold10040: 3362600-3364599 Boechera stricta
Bostr.10040s0348 5.0kb upstream 5.0kb upstream 7447 true Scaffold10040: 3355153-3362599 Boechera stricta
Bostr.10040s0348 5.0kb upstream 5.0kb upstream 5000 false Scaffold10040: 3355153-3360152 Boechera stricta
Bostr.10040s0348 5.0kb downstream 5.0kb downstream 7447 true Scaffold10040: 3360153-3367599 Boechera stricta
Bostr.10040s0348 5.0kb downstream 5.0kb downstream 5000 false Scaffold10040: 3362600-3367599 Boechera stricta
Bostr.10040s0348 10.0kb upstream 10.0kb upstream 12447 true Scaffold10040: 3350153-3362599 Boechera stricta
Bostr.10040s0348 10.0kb upstream 10.0kb upstream 10000 false Scaffold10040: 3350153-3360152 Boechera stricta
Bostr.10040s0348 10.0kb downstream 10.0kb downstream 12447 true Scaffold10040: 3360153-3372599 Boechera stricta
Bostr.10040s0348 10.0kb downstream 10.0kb downstream 10000 false Scaffold10040: 3362600-3372599 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366715 5261 Brassicaceae View MSA
123829853 5264 Brassicales-Malvales View MSA
124350051 5266 SBM View MSA
124237055 5268 Malvidae View MSA
124065838 5270 Rosid View MSA
123737748 5271 Pentapetalae View MSA
122790191 5272 Eudicot View MSA
122042343 5273 Angiosperm View MSA
121344593 5274 Embryophyte View MSA
123424931 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain