Gene : Bostr.12302s0010 B. stricta v1.2
Defline:  (1 of 1) PTHR10836:SF39 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC Genomic Order:  10
Name:  ? Bostr.12302s0010 Secondary Identifier:  ? PAC:30664482
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta CALVIN-PWY Boechera stricta pathologic  
Bstricta PHOTOALL-PWY Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.12302s0010 0.5kb upstream 0.5kb upstream 2935 true Scaffold12302: 206337-209271 Boechera stricta
Bostr.12302s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold12302: 206337-206836 Boechera stricta
Bostr.12302s0010 0.5kb downstream 0.5kb downstream 2935 true Scaffold12302: 206837-209771 Boechera stricta
Bostr.12302s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold12302: 209272-209771 Boechera stricta
Bostr.12302s0010 1.0kb upstream 1.0kb upstream 3435 true Scaffold12302: 205837-209271 Boechera stricta
Bostr.12302s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold12302: 205837-206836 Boechera stricta
Bostr.12302s0010 1.0kb downstream 1.0kb downstream 3435 true Scaffold12302: 206837-210271 Boechera stricta
Bostr.12302s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold12302: 209272-210271 Boechera stricta
Bostr.12302s0010 2.0kb upstream 2.0kb upstream 4435 true Scaffold12302: 204837-209271 Boechera stricta
Bostr.12302s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold12302: 204837-206836 Boechera stricta
Bostr.12302s0010 2.0kb downstream 2.0kb downstream 4435 true Scaffold12302: 206837-211271 Boechera stricta
Bostr.12302s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold12302: 209272-211271 Boechera stricta
Bostr.12302s0010 5.0kb upstream 5.0kb upstream 7435 true Scaffold12302: 201837-209271 Boechera stricta
Bostr.12302s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold12302: 201837-206836 Boechera stricta
Bostr.12302s0010 5.0kb downstream 5.0kb downstream 7435 true Scaffold12302: 206837-214271 Boechera stricta
Bostr.12302s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold12302: 209272-214271 Boechera stricta
Bostr.12302s0010 10.0kb upstream 10.0kb upstream 12435 true Scaffold12302: 196837-209271 Boechera stricta
Bostr.12302s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold12302: 196837-206836 Boechera stricta
Bostr.12302s0010 10.0kb downstream 10.0kb downstream 12435 true Scaffold12302: 206837-219271 Boechera stricta
Bostr.12302s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold12302: 209272-219271 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369088 5261 Brassicaceae View MSA
123835390 5264 Brassicales-Malvales View MSA
124344807 5266 SBM View MSA
124241337 5268 Malvidae View MSA
124062072 5270 Rosid View MSA
123746514 5271 Pentapetalae View MSA
122796484 5272 Eudicot View MSA
122047323 5273 Angiosperm View MSA
121310728 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain